Detailed information of TA system TA091442

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VapB
• Location: 1239368..1239936
• Replicon: chromosome
• Accession: NZ_CP025606
• Organism: Mycobacterium tuberculosis strain GG-137-10

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0TH08
• Locus tag: C0097_RS06115
• Protein ID: WP_003405865.1
• Coordinates: 1239562..1239936 (+)
• Length: 125 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TH07
• Locus tag: C0097_RS06110
• Protein ID: WP_003405863.1
• Coordinates: 1239368..1239565 (+)
• Length: 66 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
C0097_RS06090	1235409..1236047	-	639	WP_003898730.1	lipid droplet-associated protein	-
C0097_RS06095	1236137..1237144	+	1008	WP_003405853.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
C0097_RS06100	1237161..1238144	-	984	WP_003898731.1	hypothetical protein	-
C0097_RS06105	1238207..1239280	+	1074	WP_003898732.1	redox-regulated ATPase YchF	-
C0097_RS06110	1239368..1239565	+	198	WP_003405863.1	type II toxin-antitoxin system VapB family antitoxin	Antitoxin
C0097_RS06115	1239562..1239936	+	375	WP_003405865.1	type II toxin-antitoxin system VapC family toxin	Toxin
C0097_RS06120	1240139..1240837	+	699	WP_003898733.1	hypothetical protein	-
C0097_RS06125	1240955..1241140	+	186	WP_003901093.1	hypothetical protein	-
C0097_RS06130	1241067..1241342	-	276	WP_003405867.1	hypothetical protein	-
C0097_RS06135	1241585..1241908	+	324	WP_003405871.1	antibiotic biosynthesis monooxygenase	-
C0097_RS06140	1241923..1242633	-	711	WP_003911399.1	hypothetical protein	-
C0097_RS21675	1242655..1242864	+	210	WP_003911400.1	hypothetical protein	-
C0097_RS06145	1242816..1243523	-	708	Protein_1163	adenylate/guanylate cyclase domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (2-111)

Antitoxin

• Bacterial antitoxin of type II TA system, VapB (1-42)

Sequences

Toxin

Protein

• Length: 125 a.a.
• Molecular weight: 13444.56 Da
• Isoelectric Point: 5.1881

>T91442 WP_003405865.1 NZ_CP025606:1239562-1239936 [Mycobacterium tuberculosis]
VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQFPVVTHDEVLRLVGRRRLWGR
GLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALAEEVS

Nucleotide

• Length: 375 bp

>T91442 NZ_CP025606:1239562-1239936 [Mycobacterium tuberculosis]
GTGATCCTGGTCGACACTTCGGTATGGATTGAGCACCTGCGCGCCGCCGACGCGCGACTCGTCGAGCTGCTGGGCGATGA
CGAGGCCGGTTGCCATCCGCTCGTCATCGAGGAGCTGGCGCTTGGCTCGATCAAGCAGCGAGACGTTGTTCTCGATCTGT
TGGCCAACCTCTACCAGTTTCCGGTGGTGACCCACGACGAAGTGTTGCGGCTTGTCGGTCGGCGGCGGTTGTGGGGTCGG
GGACTCGGTGCCGTCGATGCCAACCTTCTTGGTTCGGTGGCTCTGGTTGGCGGCGCGCGACTATGGACGCGGGACAAGCG
GTTGAAGGCGGCGTGCGCGGAAAGCGGTGTTGCGCTGGCTGAGGAAGTGTCCTGA

Antitoxin

Protein

• Length: 66 a.a.
• Molecular weight: 6973.03 Da
• Isoelectric Point: 11.7327

>AT91442 WP_003405863.1 NZ_CP025606:1239368-1239565 [Mycobacterium tuberculosis]
MRTTVTVDDALLAKAAELTGVKEKSTLLREGLQTLVRVESARRLAALGGTDPQATAAPRRRTSPR

Nucleotide

• Length: 198 bp

>AT91442 NZ_CP025606:1239368-1239565 [Mycobacterium tuberculosis]
ATGAGGACGACGGTGACCGTTGACGACGCCTTGTTAGCCAAAGCGGCCGAATTGACTGGGGTGAAAGAGAAGTCGACGCT
CCTGCGCGAGGGGTTGCAGACACTGGTCCGGGTGGAGAGCGCCCGGCGGTTGGCGGCTCTCGGCGGCACCGACCCGCAAG
CTACCGCGGCGCCGAGACGCCGGACGTCGCCCCGGTGA

Structures

Toxin

• AlphaFold DB: G0TH08

Antitoxin

• AlphaFold DB: G0TH07