Detailed information of TA system TA090954

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VapB
• Location: 1239397..1239965
• Replicon: chromosome
• Accession: NZ_CP025598
• Organism: Mycobacterium tuberculosis strain GG-37-11

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0TH08
• Locus tag: C0084_RS06120
• Protein ID: WP_003405865.1
• Coordinates: 1239591..1239965 (+)
• Length: 125 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TH07
• Locus tag: C0084_RS06115
• Protein ID: WP_003405863.1
• Coordinates: 1239397..1239594 (+)
• Length: 66 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
C0084_RS06095	1235438..1236076	-	639	WP_003898730.1	lipid droplet-associated protein	-
C0084_RS06100	1236166..1237173	+	1008	WP_003405853.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
C0084_RS06105	1237190..1238173	-	984	WP_003898731.1	hypothetical protein	-
C0084_RS06110	1238236..1239309	+	1074	WP_003898732.1	redox-regulated ATPase YchF	-
C0084_RS06115	1239397..1239594	+	198	WP_003405863.1	type II toxin-antitoxin system VapB family antitoxin	Antitoxin
C0084_RS06120	1239591..1239965	+	375	WP_003405865.1	type II toxin-antitoxin system VapC family toxin	Toxin
C0084_RS06125	1240168..1240866	+	699	WP_003898733.1	hypothetical protein	-
C0084_RS06130	1240984..1241169	+	186	WP_003901093.1	hypothetical protein	-
C0084_RS06135	1241096..1241371	-	276	WP_003405867.1	hypothetical protein	-
C0084_RS06140	1241614..1241937	+	324	WP_003405871.1	antibiotic biosynthesis monooxygenase	-
C0084_RS06145	1241952..1242662	-	711	WP_003911399.1	hypothetical protein	-
C0084_RS21700	1242684..1242893	+	210	WP_003911400.1	hypothetical protein	-
C0084_RS06150	1242845..1243552	-	708	Protein_1163	adenylate/guanylate cyclase domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (2-111)

Antitoxin

• Bacterial antitoxin of type II TA system, VapB (1-42)

Sequences

Toxin

Protein

• Length: 125 a.a.
• Molecular weight: 13444.56 Da
• Isoelectric Point: 5.1881

>T90954 WP_003405865.1 NZ_CP025598:1239591-1239965 [Mycobacterium tuberculosis]
VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQFPVVTHDEVLRLVGRRRLWGR
GLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALAEEVS

Nucleotide

• Length: 375 bp

>T90954 NZ_CP025598:1239591-1239965 [Mycobacterium tuberculosis]
GTGATCCTGGTCGACACTTCGGTATGGATTGAGCACCTGCGCGCCGCCGACGCGCGACTCGTCGAGCTGCTGGGCGATGA
CGAGGCCGGTTGCCATCCGCTCGTCATCGAGGAGCTGGCGCTTGGCTCGATCAAGCAGCGAGACGTTGTTCTCGATCTGT
TGGCCAACCTCTACCAGTTTCCGGTGGTGACCCACGACGAAGTGTTGCGGCTTGTCGGTCGGCGGCGGTTGTGGGGTCGG
GGACTCGGTGCCGTCGATGCCAACCTTCTTGGTTCGGTGGCTCTGGTTGGCGGCGCGCGACTATGGACGCGGGACAAGCG
GTTGAAGGCGGCGTGCGCGGAAAGCGGTGTTGCGCTGGCTGAGGAAGTGTCCTGA

Antitoxin

Protein

• Length: 66 a.a.
• Molecular weight: 6973.03 Da
• Isoelectric Point: 11.7327

>AT90954 WP_003405863.1 NZ_CP025598:1239397-1239594 [Mycobacterium tuberculosis]
MRTTVTVDDALLAKAAELTGVKEKSTLLREGLQTLVRVESARRLAALGGTDPQATAAPRRRTSPR

Nucleotide

• Length: 198 bp

>AT90954 NZ_CP025598:1239397-1239594 [Mycobacterium tuberculosis]
ATGAGGACGACGGTGACCGTTGACGACGCCTTGTTAGCCAAAGCGGCCGAATTGACTGGGGTGAAAGAGAAGTCGACGCT
CCTGCGCGAGGGGTTGCAGACACTGGTCCGGGTGGAGAGCGCCCGGCGGTTGGCGGCTCTCGGCGGCACCGACCCGCAAG
CTACCGCGGCGCCGAGACGCCGGACGTCGCCCCGGTGA

Structures

Toxin

• AlphaFold DB: G0TH08

Antitoxin

• AlphaFold DB: G0TH07