Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) mazEF/MazF(toxin)
Location 754662..755202 Replicon chromosome
Accession NZ_CP025598
Organism Mycobacterium tuberculosis strain GG-37-11

Toxin (Protein)


Gene name mazF Uniprot ID P9WII0
Locus tag C0084_RS03560 Protein ID WP_003403376.1
Coordinates 754662..754970 (-) Length 103 a.a.

Antitoxin (Protein)


Gene name mazE Uniprot ID G0TQE0
Locus tag C0084_RS03565 Protein ID WP_003403381.1
Coordinates 754957..755202 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C0084_RS03535 749977..751482 + 1506 WP_003403360.1 carotenoid cleavage oxygenase -
C0084_RS03540 751563..752573 + 1011 WP_009937374.1 ABC transporter ATP-binding protein -
C0084_RS03545 752961..753344 - 384 WP_003403365.1 ribonuclease VapC6 -
C0084_RS03550 753439..753594 - 156 WP_003403368.1 type II toxin-antitoxin system VapB family antitoxin -
C0084_RS03555 753670..754386 - 717 WP_003403371.1 CPBP family intramembrane metalloprotease -
C0084_RS03560 754662..754970 - 309 WP_003403376.1 type II toxin-antitoxin system PemK/MazF family toxin Toxin
C0084_RS03565 754957..755202 - 246 WP_003403381.1 ribbon-helix-helix protein, CopG family Antitoxin
C0084_RS03570 755312..755749 - 438 WP_003403386.1 type II toxin-antitoxin system VapC family toxin -
C0084_RS03575 755746..756000 - 255 WP_003911263.1 antitoxin VapB7 -
C0084_RS03580 756114..758477 + 2364 WP_003898547.1 arylsulfatase AtsD -
C0084_RS03585 758540..758866 + 327 WP_003403401.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
C0084_RS03590 758778..759116 + 339 WP_003403405.1 PIN domain-containing protein -
C0084_RS03595 759113..759286 + 174 WP_003898549.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(1-101)

Antitoxin

Ribbon-helix-helix protein, CopG

(2-38)


Sequences

Toxin        


Download         Length: 103 a.a.        Molecular weight: 11320.10 Da        Isoelectric Point: 11.6554

>T90946 WP_003403376.1 NZ_CP025598:c754970-754662 [Mycobacterium tuberculosis]
MRRGELWFAATPGGDRPVLVLTRDPVADRIGAVVVVALTRTRRGLVSELELTAVENRVPSDCVVNFDNIHTLPRTAFRRR
ITRLSPARLHEACQTLRASTGC

Download         Length: 309 bp

>T90946 NZ_CP025598:c754970-754662 [Mycobacterium tuberculosis]
ATGCGGCGCGGTGAATTGTGGTTTGCCGCCACACCTGGTGGTGACAGACCAGTACTTGTCCTTACCAGAGATCCGGTGGC
AGACCGCATCGGCGCGGTCGTTGTGGTGGCCCTAACCCGCACCCGCCGAGGCCTGGTGTCGGAATTGGAGCTCACGGCCG
TCGAAAACCGTGTTCCGAGCGACTGCGTCGTCAACTTCGACAACATTCATACGTTGCCACGCACCGCATTCCGACGCCGC
ATCACCCGGCTGTCCCCGGCCCGCCTGCACGAAGCCTGTCAAACACTCCGGGCGAGCACGGGGTGTTGA

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 9169.01 Da        Isoelectric Point: 4.2070

>AT90946 WP_003403381.1 NZ_CP025598:c755202-754957 [Mycobacterium tuberculosis]
MLSFRADDHDVDLADAWARRLHIGRSELLRDALRRHLAALAADQDVQAYTERPLTDDENALAEIADWGPAEDWADWADAA
R

Download         Length: 246 bp

>AT90946 NZ_CP025598:c755202-754957 [Mycobacterium tuberculosis]
ATGCTCAGCTTCCGCGCCGACGACCACGACGTCGACCTGGCCGACGCGTGGGCGCGTCGCCTACACATCGGCCGCTCCGA
GCTGCTGCGCGATGCGCTGCGACGTCACTTGGCCGCGCTGGCCGCGGACCAGGATGTCCAGGCCTACACCGAGCGACCGT
TGACGGACGACGAGAACGCACTGGCTGAGATCGCCGACTGGGGGCCGGCGGAGGACTGGGCCGACTGGGCCGATGCGGCG
CGGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4BSE5

Antitoxin

Source ID Structure
AlphaFold DB G0TQE0

References