90908

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VapB
Location 2258015..2258641 Replicon chromosome
Accession NZ_CP025597
Organism Mycobacterium tuberculosis strain GG-36-11

Toxin (Protein)


Gene name vapC Uniprot ID P64926
Locus tag C0086_RS10970 Protein ID WP_003410075.1
Coordinates 2258243..2258641 (+) Length 133 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID A0A806JLL8
Locus tag C0086_RS10965 Protein ID WP_003911750.1
Coordinates 2258015..2258242 (+) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C0086_RS10955 2256054..2256398 - 345 WP_003410065.1 ferredoxin family protein -
C0086_RS10960 2256587..2257756 - 1170 WP_003899126.1 ATP-binding protein -
C0086_RS10965 2258015..2258242 + 228 WP_003911750.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
C0086_RS10970 2258243..2258641 + 399 WP_003410075.1 PIN domain nuclease Toxin
C0086_RS10975 2258824..2259255 - 432 WP_003410078.1 MarR family winged helix-turn-helix transcriptional regulator -
C0086_RS10980 2259356..2259790 + 435 WP_003914358.1 DUF1398 domain-containing protein -
C0086_RS10995 2260227..2260406 - 180 Protein_2079 hypothetical protein -
C0086_RS21910 2260467..2261114 + 648 WP_071854215.1 transposase -
C0086_RS21915 2261068..2261658 + 591 WP_003899131.1 IS110 family transposase -
C0086_RS11010 2261786..2263042 - 1257 WP_003410095.1 HNH endonuclease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(1-120)

Antitoxin

Bacterial antitoxin of type II TA system, VapB

(2-43)


Sequences

Toxin        


Download         Length: 133 a.a.        Molecular weight: 14731.02 Da        Isoelectric Point: 6.7067

>T90908 WP_003410075.1 NZ_CP025597:2258243-2258641 [Mycobacterium tuberculosis]
MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLLQRFAIEPLAPVRDAEDAAAI
HRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAIRTHCGLRTEPLF

Download         Length: 399 bp

>T90908 NZ_CP025597:2258243-2258641 [Mycobacterium tuberculosis]
ATGATCGTCGACACCTCGGTCTGGATCGCATATCTCTCCACGTCAGAGTCGTTGGCCAGTCGCTGGCTAGCCGATCGCAT
TGCCGCTGACTCGACGGTGATCGTGCCCGAGGTGGTGATGATGGAGCTGCTGATCGGTAAGACCGATGAGGACACCGCCG
CACTGCGCCGACGGCTCCTGCAGCGATTCGCTATCGAACCGCTGGCCCCGGTCCGCGACGCGGAAGATGCCGCCGCCATT
CACCGGCGCTGTCGTCGCGGCGGCGACACCGTACGCAGCCTGATCGATTGCCAGGTGGCCGCGATGGCGTTGCGGATCGG
GGTCGCCGTGGCGCATCGTGATCGCGACTACGAGGCGATCCGCACACATTGCGGACTACGCACCGAGCCGTTGTTCTGA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8346.16 Da        Isoelectric Point: 4.1621

>AT90908 WP_003911750.1 NZ_CP025597:2258015-2258242 [Mycobacterium tuberculosis]
VSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFDFSNDEIESFSDTDRKLADES

Download         Length: 228 bp

>AT90908 NZ_CP025597:2258015-2258242 [Mycobacterium tuberculosis]
GTGTCACGGACCAACATCGAGATCGACGACGAACTCGTGGCCGCCGCACAGCGGATGTACCGACTCGATTCCAAGCGAAG
TGCCGTCGACCTCGCGCTGCGCCGGCTCGTGGGTGAACCGTTGGGCCGCGATGAGGCTTTGGCGCTGCAGGGCAGCGGTT
TCGACTTCAGCAACGATGAGATCGAATCGTTCTCGGATACGGACCGCAAGCTCGCCGACGAGTCGTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4CHG

Antitoxin

Source ID Structure
AlphaFold DB A0A806JLL8

References