Detailed information of TA system TA090854

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/PIN(toxin)
• Location: 2854172..2854812
• Replicon: chromosome
• Accession: NZ_CP025596
• Organism: Mycobacterium tuberculosis strain GG-27-11

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0TQ08
• Locus tag: C0082_RS13870
• Protein ID: WP_003412970.1
• Coordinates: 2854172..2854591 (-)
• Length: 140 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TQ09
• Locus tag: C0082_RS13875
• Protein ID: WP_003412975.1
• Coordinates: 2854588..2854812 (-)
• Length: 75 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
C0082_RS13840	2849757..2850479	-	723	WP_003412957.1	DUF1906 domain-containing protein	-
C0082_RS13850	2850996..2851223	+	228	WP_003412960.1	type II toxin-antitoxin system VapB family antitoxin	-
C0082_RS13855	2851220..2851621	+	402	WP_003412963.1	PIN domain-containing protein	-
C0082_RS13860	2851656..2852576	-	921	WP_003412965.1	restriction endonuclease	-
C0082_RS21855	2852917..2853162	-	246	WP_071854223.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	-
C0082_RS13865	2853221..2854171	+	951	WP_003911916.1	Lsr2 family protein	-
C0082_RS13870	2854172..2854591	-	420	WP_003412970.1	type II toxin-antitoxin system VapC family toxin	Toxin
C0082_RS13875	2854588..2854812	-	225	WP_003412975.1	antitoxin VapB39	Antitoxin
C0082_RS13880	2854843..2857686	-	2844	WP_003899363.1	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	-
C0082_RS13885	2857758..2858159	-	402	WP_003412981.1	hypothetical protein	-
C0082_RS13890	2858159..2858629	-	471	WP_003899364.1	transcription antitermination factor NusB	-
C0082_RS13895	2858632..2859195	-	564	WP_003412989.1	elongation factor P	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (4-128)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 140 a.a.
• Molecular weight: 14732.70 Da
• Isoelectric Point: 6.7519

>T90854 WP_003412970.1 NZ_CP025596:c2854591-2854172 [Mycobacterium tuberculosis]
VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTPAIAIAQLAAMTSLAGHTF
WPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVTFDAALADSASAGLVEVL

Nucleotide

• Length: 420 bp

>T90854 NZ_CP025596:c2854591-2854172 [Mycobacterium tuberculosis]
GTGACGGCACTGCTCGATGTCAATGTGCTGATCGCGCTGGGCTGGCCGAATCACGTTCACCATGCGGCCGCGCAGCGATG
GTTCACGCAGTTCTCCTCGAATGGGTGGGCCACCACGCCGATCACCGAGGCAGGGTATGTCCGAATTTCAAGCAATCGCA
GTGTGATGCAGGTGTCGACCACGCCGGCTATCGCGATCGCTCAGTTGGCGGCGATGACTTCTCTTGCCGGGCACACGTTT
TGGCCTGACGATGTGCCACTGATCGTTGGGAGCGCCGGCGATCGCGATGCGGTGTCCAACCACCGTCGGGTCACCGACTG
CCATCTCATCGCCTTGGCCGCGCGCTACGGGGGCCGGTTGGTCACATTCGATGCCGCACTGGCCGATTCAGCATCCGCAG
GCCTCGTCGAGGTGTTGTAG

Antitoxin

Protein

• Length: 75 a.a.
• Molecular weight: 7993.94 Da
• Isoelectric Point: 4.0057

>AT90854 WP_003412975.1 NZ_CP025596:c2854812-2854588 [Mycobacterium tuberculosis]
MRTTLQIDDDVLEDARSIARSEGKSVGAVISELARRSLRPVGIVEVDGFPVFDVPPDAPTVTSEDVVRALEDDV

Nucleotide

• Length: 225 bp

>AT90854 NZ_CP025596:c2854812-2854588 [Mycobacterium tuberculosis]
ATGCGCACCACGTTGCAGATTGATGATGATGTTCTAGAAGATGCTCGTAGCATCGCGCGGTCGGAGGGCAAGTCAGTCGG
CGCGGTAATTTCTGAGTTGGCGCGTAGGTCGCTCCGTCCGGTTGGGATTGTCGAGGTTGACGGATTTCCGGTTTTTGATG
TTCCGCCGGATGCGCCGACGGTGACTTCCGAGGATGTCGTCCGCGCGCTCGAGGACGACGTGTGA

Structures

Toxin

• AlphaFold DB: G0TQ08

Antitoxin

• AlphaFold DB: G0TQ09