Detailed information of TA system TA090752

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): Rv0299-vapB/-
• Location: 363481..364052
• Replicon: chromosome
• Accession: NZ_CP025595
• Organism: Mycobacterium tuberculosis strain GG-20-11

Toxin (Protein)

• Gene name: Rv0299
• Uniprot ID: -
• Locus tag: C0093_RS01625
• Protein ID: WP_003401560.1
• Coordinates: 363481..363783 (+)
• Length: 101 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: O07227
• Locus tag: C0093_RS01630
• Protein ID: WP_003401563.1
• Coordinates: 363831..364052 (+)
• Length: 74 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
C0093_RS01605	358950..359753	-	804	WP_003401540.1	hypothetical protein	-
C0093_RS01610	359763..361160	-	1398	WP_003401544.1	sulfatase	-
C0093_RS01615	361339..363114	+	1776	WP_010886074.1	PE family protein	-
C0093_RS01620	363257..363484	+	228	WP_003401555.1	ribbon-helix-helix protein, CopG family	-
C0093_RS01625	363481..363783	+	303	WP_003401560.1	toxin-antitoxin system toxin	Toxin
C0093_RS01630	363831..364052	+	222	WP_003401563.1	type II toxin-antitoxin system antitoxin VapB2	Antitoxin
C0093_RS01635	364049..364474	+	426	WP_003401566.1	PIN domain nuclease	-
C0093_RS01640	364610..365242	+	633	WP_003401571.1	TetR/AcrR family transcriptional regulator	-
C0093_RS01645	365239..366147	+	909	WP_003900117.1	SDR family NAD(P)-dependent oxidoreductase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

• Ribbon-helix-helix protein, CopG (9-37)

Sequences

Toxin

Protein

• Length: 101 a.a.
• Molecular weight: 10442.16 Da
• Isoelectric Point: 4.9609

>T90752 WP_003401560.1 NZ_CP025595:363481-363783 [Mycobacterium tuberculosis]
MIAPGDIAPRRDSEHELYVAVLSNALHRAADTGRVITCPFIPGRVPEDLLAMVVAVEQPNGTLLPELVQWLHVAALGAPL
GNAGVAALREAASVVTALLC

Nucleotide

• Length: 303 bp

>T90752 NZ_CP025595:363481-363783 [Mycobacterium tuberculosis]
TTGATCGCTCCCGGCGACATCGCGCCGCGCCGCGACAGTGAACACGAGCTCTACGTCGCCGTCTTGTCCAACGCGCTCCA
TCGGGCCGCGGACACCGGACGGGTGATCACCTGCCCATTCATTCCGGGCCGGGTCCCCGAGGATCTCTTGGCGATGGTGG
TGGCGGTCGAGCAACCCAACGGCACGCTGCTGCCGGAACTCGTGCAGTGGCTTCATGTTGCCGCGCTCGGTGCGCCACTC
GGCAACGCGGGCGTGGCCGCCCTACGCGAGGCTGCCTCGGTCGTGACAGCTCTGCTCTGTTAG

Antitoxin

Protein

• Length: 74 a.a.
• Molecular weight: 8088.31 Da
• Isoelectric Point: 10.7177

>AT90752 WP_003401563.1 NZ_CP025595:363831-364052 [Mycobacterium tuberculosis]
MSDVLIRDIPDDVLASLDAIAARLGLSRTEYIRRRLAQDAQTARVTVTAADLRRLRGAVAGLGDPELMRQAWR

Nucleotide

• Length: 222 bp

>AT90752 NZ_CP025595:363831-364052 [Mycobacterium tuberculosis]
ATGAGTGATGTACTGATTCGGGACATCCCCGACGACGTGTTAGCAAGCCTTGACGCGATCGCGGCACGCTTGGGCTTGTC
GCGGACCGAATACATCCGTCGGCGTTTAGCCCAGGATGCGCAGACGGCTCGCGTCACCGTGACAGCCGCGGATCTTCGAC
GCCTCAGGGGTGCGGTTGCCGGTCTGGGCGATCCCGAGCTTATGCGTCAGGCGTGGAGGTGA

Structures

Antitoxin

• AlphaFold DB: A0A829CG48