Detailed information of TA system TA090629

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): Rv0298-Rv0299/-
• Location: 363219..363745
• Replicon: chromosome
• Accession: NZ_CP025593
• Organism: Mycobacterium tuberculosis strain GG-111-10

Toxin (Protein)

• Gene name: Rv0299
• Uniprot ID: -
• Locus tag: C0092_RS01620
• Protein ID: WP_003401560.1
• Coordinates: 363443..363745 (+)
• Length: 101 a.a.

Antitoxin (Protein)

• Gene name: Rv0298
• Uniprot ID: P9WJ08
• Locus tag: C0092_RS01615
• Protein ID: WP_003401555.1
• Coordinates: 363219..363446 (+)
• Length: 76 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
C0092_RS01600	358912..359715	-	804	WP_003401540.1	hypothetical protein	-
C0092_RS01605	359725..361122	-	1398	WP_003401544.1	sulfatase	-
C0092_RS01610	361301..363076	+	1776	WP_010886074.1	PE family protein	-
C0092_RS01615	363219..363446	+	228	WP_003401555.1	ribbon-helix-helix protein, CopG family	Antitoxin
C0092_RS01620	363443..363745	+	303	WP_003401560.1	toxin-antitoxin system toxin	Toxin
C0092_RS01625	363793..364014	+	222	WP_003401563.1	type II toxin-antitoxin system antitoxin VapB2	-
C0092_RS01630	364011..364436	+	426	WP_003401566.1	PIN domain nuclease	-
C0092_RS01635	364572..365204	+	633	WP_003401571.1	TetR/AcrR family transcriptional regulator	-
C0092_RS01640	365201..366109	+	909	WP_003900117.1	SDR family NAD(P)-dependent oxidoreductase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

• Ribbon-helix-helix protein, CopG (6-41)

Sequences

Toxin

Protein

• Length: 101 a.a.
• Molecular weight: 10442.16 Da
• Isoelectric Point: 4.9609

>T90629 WP_003401560.1 NZ_CP025593:363443-363745 [Mycobacterium tuberculosis]
MIAPGDIAPRRDSEHELYVAVLSNALHRAADTGRVITCPFIPGRVPEDLLAMVVAVEQPNGTLLPELVQWLHVAALGAPL
GNAGVAALREAASVVTALLC

Nucleotide

• Length: 303 bp

>T90629 NZ_CP025593:363443-363745 [Mycobacterium tuberculosis]
TTGATCGCTCCCGGCGACATCGCGCCGCGCCGCGACAGTGAACACGAGCTCTACGTCGCCGTCTTGTCCAACGCGCTCCA
TCGGGCCGCGGACACCGGACGGGTGATCACCTGCCCATTCATTCCGGGCCGGGTCCCCGAGGATCTCTTGGCGATGGTGG
TGGCGGTCGAGCAACCCAACGGCACGCTGCTGCCGGAACTCGTGCAGTGGCTTCATGTTGCCGCGCTCGGTGCGCCACTC
GGCAACGCGGGCGTGGCCGCCCTACGCGAGGCTGCCTCGGTCGTGACAGCTCTGCTCTGTTAG

Antitoxin

Protein

• Length: 76 a.a.
• Molecular weight: 8130.21 Da
• Isoelectric Point: 7.0084

>AT90629 WP_003401555.1 NZ_CP025593:363219-363446 [Mycobacterium tuberculosis]
MTKEKISVTVDAAVLAAIDADARAAGLNRSEMIEQALRNEHLRVALRDYTAKTVPALDIDAYAQRVYQANRAAGS

Nucleotide

• Length: 228 bp

>AT90629 NZ_CP025593:363219-363446 [Mycobacterium tuberculosis]
ATGACGAAAGAGAAGATCTCCGTGACGGTGGACGCGGCCGTCCTCGCGGCGATCGACGCGGACGCCAGGGCGGCGGGTTT
GAATCGGTCGGAAATGATTGAGCAGGCACTGCGCAACGAGCACCTGCGTGTCGCTCTGCGCGATTACACGGCTAAAACCG
TACCGGCGTTGGACATCGATGCCTACGCACAGCGGGTGTACCAGGCGAACCGGGCGGCCGGAAGTTGA

Structures

Antitoxin

• AlphaFold DB: A0A7U4F8T1