Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1924517..1924662 | Replicon | chromosome |
| Accession | NZ_CP025576 | ||
| Organism | Klebsiella pneumoniae strain 08EU827 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1924553..1924655 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1924517..1924662 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CY656_RS09480 | 1919647..1921707 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| CY656_RS09485 | 1921711..1922370 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| CY656_RS09490 | 1922449..1922679 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CY656_RS09495 | 1922792..1923166 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CY656_RS09500 | 1923170..1924039 | + | 870 | WP_023282759.1 | copper homeostasis membrane protein CopD | - |
| CY656_RS09505 | 1924056..1924394 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1924517..1924662 | - | 146 | - | - | Antitoxin |
| - | 1924553..1924655 | + | 103 | - | - | Toxin |
| CY656_RS28065 | 1925030..1925173 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| CY656_RS09515 | 1925278..1926246 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CY656_RS09520 | 1926403..1927056 | + | 654 | WP_032418800.1 | protein-serine/threonine phosphatase | - |
| CY656_RS09525 | 1927053..1927244 | - | 192 | WP_002911395.1 | YebW family protein | - |
| CY656_RS09530 | 1927342..1927581 | - | 240 | WP_002911393.1 | YebV family protein | - |
| CY656_RS09535 | 1927697..1929130 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T90607 NZ_CP025576:1924553-1924655 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT90607 NZ_CP025576:c1924662-1924517 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
