Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 781705..781976 | Replicon | chromosome |
| Accession | NZ_CP025520 | ||
| Organism | Escherichia coli strain DH5alpha | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 781743..781846 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 781705..781976 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDN75_RS04290 | 778862..780301 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CDN75_RS04295 | 780419..780655 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CDN75_RS04300 | 780760..780951 | + | 192 | WP_000457842.1 | YebW family protein | - |
| CDN75_RS04305 | 780952..781608 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 781705..781976 | + | 272 | - | - | Antitoxin |
| - | 781743..781846 | - | 104 | - | - | Toxin |
| CDN75_RS04310 | 782004..782345 | - | 342 | WP_000976476.1 | YebY family protein | - |
| CDN75_RS04315 | 782358..783230 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| CDN75_RS04320 | 783234..783608 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CDN75_RS04325 | 783747..783977 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CDN75_RS04330 | 784079..784735 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CDN75_RS04335 | 784759..785421 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T90480 NZ_CP025520:c781846-781743 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT90480 NZ_CP025520:781705-781976 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
