Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | tacAT/DUF1778(antitoxin) |
| Location | 121056..121828 | Replicon | plasmid pRlvB |
| Accession | NZ_CP025508 | ||
| Organism | Rhizobium leguminosarum bv. viciae strain UPM791 | ||
Toxin (Protein)
| Gene name | tacT | Uniprot ID | A0A2Z4YVU8 |
| Locus tag | RLV_RS11180 | Protein ID | WP_018246328.1 |
| Coordinates | 121340..121828 (+) | Length | 163 a.a. |
Antitoxin (Protein)
| Gene name | TacA2 | Uniprot ID | A0A7Y3WKI8 |
| Locus tag | RLV_RS11175 | Protein ID | WP_026188748.1 |
| Coordinates | 121056..121340 (+) | Length | 95 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RLV_RS11155 | 116250..118658 | + | 2409 | WP_018246324.1 | ABC transporter permease | - |
| RLV_RS11160 | 118648..119715 | + | 1068 | WP_018246325.1 | iron ABC transporter permease | - |
| RLV_RS11165 | 119823..120572 | + | 750 | WP_018246326.1 | sulfite exporter TauE/SafE family protein | - |
| RLV_RS11175 | 121056..121340 | + | 285 | WP_026188748.1 | DUF1778 domain-containing protein | Antitoxin |
| RLV_RS11180 | 121340..121828 | + | 489 | WP_018246328.1 | GNAT family N-acetyltransferase | Toxin |
| RLV_RS11185 | 122118..122642 | + | 525 | WP_018517806.1 | hypothetical protein | - |
| RLV_RS11190 | 122673..122933 | - | 261 | WP_018246330.1 | DUF982 domain-containing protein | - |
| RLV_RS11200 | 123587..123850 | + | 264 | WP_018246331.1 | DUF982 domain-containing protein | - |
| RLV_RS38190 | 124144..124470 | + | 327 | WP_155256937.1 | hypothetical protein | - |
| RLV_RS11210 | 124507..124719 | - | 213 | WP_018246334.1 | hypothetical protein | - |
| RLV_RS38195 | 125144..125362 | + | 219 | WP_128409058.1 | hypothetical protein | - |
| RLV_RS11220 | 125355..126056 | + | 702 | WP_018246336.1 | DUF899 family protein | - |
| RLV_RS11225 | 126076..126705 | - | 630 | WP_026188749.1 | J domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Mobilizable plasmid | - | - | 1..597290 | 597290 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 163 a.a. Molecular weight: 17293.88 Da Isoelectric Point: 7.9271
>T90456 WP_018246328.1 NZ_CP025508:121340-121828 [Rhizobium leguminosarum bv. viciae]
MLSAPTLLGEAHDLQLFDSGHDSLDEWLRRRARANQVSGASRTYVVCEGERVVGYYCLSSGALAVSDAPGAIRRNMPDPV
PMAVLGRLAIDRNWQGKGIGAALLQDAVLRTGQAAHIMGIRGLLVHAISDEAKAFYEHFGFAASPANPMALVLSLKAQVG
LK
MLSAPTLLGEAHDLQLFDSGHDSLDEWLRRRARANQVSGASRTYVVCEGERVVGYYCLSSGALAVSDAPGAIRRNMPDPV
PMAVLGRLAIDRNWQGKGIGAALLQDAVLRTGQAAHIMGIRGLLVHAISDEAKAFYEHFGFAASPANPMALVLSLKAQVG
LK
Download Length: 489 bp
>T90456 NZ_CP025508:121340-121828 [Rhizobium leguminosarum bv. viciae]
ATGTTGTCTGCACCGACGCTTCTCGGCGAAGCGCACGATCTCCAGCTATTCGACAGCGGGCACGACAGCCTTGATGAATG
GCTGCGCCGCAGGGCGCGGGCCAATCAGGTCAGCGGCGCATCGCGAACCTATGTGGTCTGCGAGGGCGAGCGCGTTGTCG
GTTATTACTGCCTCTCATCGGGAGCGCTGGCGGTCTCGGACGCTCCGGGAGCGATCCGGCGCAACATGCCCGACCCGGTT
CCCATGGCAGTCCTTGGCCGTCTGGCCATCGATCGCAACTGGCAGGGAAAAGGAATCGGAGCCGCGCTGTTGCAAGACGC
CGTGCTGCGTACCGGACAGGCAGCCCATATCATGGGTATTCGCGGCCTTCTGGTTCACGCGATCTCCGATGAGGCCAAGG
CCTTCTATGAGCATTTTGGATTTGCAGCGTCGCCCGCGAATCCTATGGCCTTGGTGTTATCATTGAAAGCTCAAGTAGGC
CTGAAGTGA
ATGTTGTCTGCACCGACGCTTCTCGGCGAAGCGCACGATCTCCAGCTATTCGACAGCGGGCACGACAGCCTTGATGAATG
GCTGCGCCGCAGGGCGCGGGCCAATCAGGTCAGCGGCGCATCGCGAACCTATGTGGTCTGCGAGGGCGAGCGCGTTGTCG
GTTATTACTGCCTCTCATCGGGAGCGCTGGCGGTCTCGGACGCTCCGGGAGCGATCCGGCGCAACATGCCCGACCCGGTT
CCCATGGCAGTCCTTGGCCGTCTGGCCATCGATCGCAACTGGCAGGGAAAAGGAATCGGAGCCGCGCTGTTGCAAGACGC
CGTGCTGCGTACCGGACAGGCAGCCCATATCATGGGTATTCGCGGCCTTCTGGTTCACGCGATCTCCGATGAGGCCAAGG
CCTTCTATGAGCATTTTGGATTTGCAGCGTCGCCCGCGAATCCTATGGCCTTGGTGTTATCATTGAAAGCTCAAGTAGGC
CTGAAGTGA
Antitoxin
Download Length: 95 a.a. Molecular weight: 10687.05 Da Isoelectric Point: 8.6086
>AT90456 WP_026188748.1 NZ_CP025508:121056-121340 [Rhizobium leguminosarum bv. viciae]
MTSKNATDTHTRAVNLRVREDVRVLIDRAAKAHGKTRSDFMIDASRRAAEDALLDQTLVRVDPDSYKHYLAVLDQPPNSE
GFERLMNAPKPWQP
MTSKNATDTHTRAVNLRVREDVRVLIDRAAKAHGKTRSDFMIDASRRAAEDALLDQTLVRVDPDSYKHYLAVLDQPPNSE
GFERLMNAPKPWQP
Download Length: 285 bp
>AT90456 NZ_CP025508:121056-121340 [Rhizobium leguminosarum bv. viciae]
ATGACCAGCAAAAATGCCACTGATACCCATACCCGCGCCGTTAACTTGAGGGTTCGTGAGGACGTTCGCGTCCTGATCGA
CCGCGCCGCCAAGGCCCACGGGAAAACCCGTTCGGATTTCATGATCGACGCATCGCGCCGTGCTGCAGAAGACGCGCTTC
TCGATCAGACATTGGTGCGGGTCGATCCTGACAGCTACAAACACTATCTCGCCGTCCTCGACCAGCCGCCAAATAGCGAA
GGCTTCGAACGGTTGATGAATGCTCCCAAACCCTGGCAGCCGTAA
ATGACCAGCAAAAATGCCACTGATACCCATACCCGCGCCGTTAACTTGAGGGTTCGTGAGGACGTTCGCGTCCTGATCGA
CCGCGCCGCCAAGGCCCACGGGAAAACCCGTTCGGATTTCATGATCGACGCATCGCGCCGTGCTGCAGAAGACGCGCTTC
TCGATCAGACATTGGTGCGGGTCGATCCTGACAGCTACAAACACTATCTCGCCGTCCTCGACCAGCCGCCAAATAGCGAA
GGCTTCGAACGGTTGATGAATGCTCCCAAACCCTGGCAGCCGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A2Z4YVU8 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A7Y3WKI8 |