Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3425351..3425496 | Replicon | chromosome |
| Accession | NZ_CP025461 | ||
| Organism | Klebsiella pneumoniae strain F44 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3425358..3425460 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3425351..3425496 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CYE02_RS17480 | 3420883..3422316 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CYE02_RS17485 | 3422432..3422671 | + | 240 | WP_002911393.1 | YebV family protein | - |
| CYE02_RS17490 | 3422769..3422960 | + | 192 | WP_002911395.1 | YebW family protein | - |
| CYE02_RS17495 | 3422957..3423610 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| CYE02_RS17500 | 3423767..3424735 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CYE02_RS30880 | 3424840..3424983 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3425351..3425496 | + | 146 | - | - | Antitoxin |
| - | 3425358..3425460 | - | 103 | - | - | Toxin |
| CYE02_RS17510 | 3425619..3425957 | - | 339 | WP_002911404.1 | YebY family protein | - |
| CYE02_RS17515 | 3425974..3426843 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| CYE02_RS17520 | 3426847..3427221 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CYE02_RS17525 | 3427334..3427564 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CYE02_RS17530 | 3427643..3428302 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| CYE02_RS17535 | 3428306..3430366 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T90370 NZ_CP025461:c3425460-3425358 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT90370 NZ_CP025461:3425351-3425496 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
