Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3424634..3424779 | Replicon | chromosome |
| Accession | NZ_CP025456 | ||
| Organism | Klebsiella pneumoniae strain KP69 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3424641..3424743 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3424634..3424779 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CYD98_RS17400 | 3420166..3421599 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CYD98_RS17405 | 3421715..3421954 | + | 240 | WP_002911393.1 | YebV family protein | - |
| CYD98_RS17410 | 3422052..3422243 | + | 192 | WP_002911395.1 | YebW family protein | - |
| CYD98_RS17415 | 3422240..3422893 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| CYD98_RS17420 | 3423050..3424018 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CYD98_RS30490 | 3424123..3424266 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3424634..3424779 | + | 146 | - | - | Antitoxin |
| - | 3424641..3424743 | - | 103 | - | - | Toxin |
| CYD98_RS17430 | 3424902..3425240 | - | 339 | WP_002911404.1 | YebY family protein | - |
| CYD98_RS17435 | 3425257..3426126 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| CYD98_RS17440 | 3426130..3426504 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CYD98_RS17445 | 3426617..3426847 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CYD98_RS17450 | 3426926..3427585 | + | 660 | WP_101963436.1 | exodeoxyribonuclease X | - |
| CYD98_RS17455 | 3427589..3429649 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T90341 NZ_CP025456:c3424743-3424641 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT90341 NZ_CP025456:3424634-3424779 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
