Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 1276008..1276627 Replicon chromosome
Accession NZ_CP025456
Organism Klebsiella pneumoniae strain KP69

Toxin (Protein)


Gene name Hha Uniprot ID R8WYV2
Locus tag CYD98_RS06425 Protein ID WP_002892050.1
Coordinates 1276008..1276226 (-) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID J2DPF6
Locus tag CYD98_RS06430 Protein ID WP_002892066.1
Coordinates 1276253..1276627 (-) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CYD98_RS06395 1272055..1272318 + 264 WP_002892011.1 type B 50S ribosomal protein L31 -
CYD98_RS06400 1272318..1272458 + 141 WP_002892018.1 type B 50S ribosomal protein L36 -
CYD98_RS06405 1272455..1273153 - 699 WP_002892021.1 GNAT family N-acetyltransferase -
CYD98_RS06410 1273254..1274705 + 1452 WP_002892023.1 PLP-dependent aminotransferase family protein -
CYD98_RS06415 1274680..1275150 - 471 WP_002892026.1 YlaC family protein -
CYD98_RS30705 1275171..1275311 + 141 WP_004147370.1 hypothetical protein -
CYD98_RS06420 1275283..1275849 - 567 WP_002892030.1 maltose O-acetyltransferase -
CYD98_RS06425 1276008..1276226 - 219 WP_002892050.1 hemolysin expression modulator Hha Toxin
CYD98_RS06430 1276253..1276627 - 375 WP_002892066.1 Hha toxicity modulator TomB Antitoxin
CYD98_RS06435 1277113..1280259 - 3147 WP_020326861.1 multidrug efflux RND transporter permease subunit -
CYD98_RS06440 1280282..1281475 - 1194 WP_002892072.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-116)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T90340 WP_002892050.1 NZ_CP025456:c1276226-1276008 [Klebsiella pneumoniae]
MSDKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPTSVWKFIR

Download         Length: 219 bp

>T90340 NZ_CP025456:c1276226-1276008 [Klebsiella pneumoniae]
ATGTCTGATAAGCCATTAACTAAAACAGACTATTTGATGCGCTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGCGT
CATTGAAAAAAATAAATATGAACTGTCTGATAATGAGCTGGCGGTATTTTACTCAGCTGCCGACCATCGTCTGGCGGAAC
TGACCATGAATAAGCTATACGATAAAATCCCGACTTCTGTCTGGAAATTTATCCGCTAA

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14368.06 Da        Isoelectric Point: 4.8989

>AT90340 WP_002892066.1 NZ_CP025456:c1276627-1276253 [Klebsiella pneumoniae]
MDEYSPKRHDIAQLRFLCETLYHDCLANLEESNHGWVNDPTSAVNLQLNELIEHIATFALNYKIKYAEDNKLIAQVDEYL
DDTFTLFSNYGINSTDLQKWKKSGNRLFRCFVNASRENPASLSC

Download         Length: 375 bp

>AT90340 NZ_CP025456:c1276627-1276253 [Klebsiella pneumoniae]
ATGGACGAATACTCGCCAAAAAGACATGATATTGCACAGCTACGCTTTCTCTGCGAAACGCTGTATCATGACTGCCTTGC
AAACCTGGAAGAGAGCAACCATGGCTGGGTCAACGACCCGACGTCGGCTGTCAATCTCCAGTTAAATGAATTGATCGAGC
ACATTGCCACATTCGCTCTTAATTATAAAATTAAGTATGCAGAGGATAATAAGCTGATCGCTCAGGTTGACGAATATCTG
GACGACACTTTTACGTTGTTCAGTAACTACGGCATTAACTCTACGGATTTGCAAAAGTGGAAAAAATCCGGTAACCGACT
ATTTCGTTGCTTTGTCAACGCCAGCCGGGAAAACCCGGCCAGTCTATCGTGTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2P8K6F2

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GJ93

References