Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1939046..1939314 | Replicon | chromosome |
| Accession | NZ_CP025401 | ||
| Organism | Escherichia coli strain MS8345 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1939084..1939186 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1939046..1939314 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MS8345_RS10230 | 1936203..1937642 | + | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MS8345_RS10235 | 1937760..1937996 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| MS8345_RS10240 | 1938101..1938292 | + | 192 | WP_001296140.1 | YebW family protein | - |
| MS8345_RS10245 | 1938293..1938949 | - | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| - | 1939046..1939314 | + | 269 | - | - | Antitoxin |
| - | 1939084..1939186 | - | 103 | - | - | Toxin |
| MS8345_RS10250 | 1939344..1939685 | - | 342 | WP_000984819.1 | YebY family protein | - |
| MS8345_RS10255 | 1939698..1940570 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| MS8345_RS10260 | 1940574..1940948 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| MS8345_RS10265 | 1941087..1941317 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MS8345_RS10270 | 1941419..1942075 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| MS8345_RS10275 | 1942098..1942760 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T90277 NZ_CP025401:c1939186-1939084 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT90277 NZ_CP025401:1939046-1939314 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
