Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 2445..2980 Replicon plasmid pSNE2-1928
Accession NZ_CP025239
Organism Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1928

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag AW84_RS24330 Protein ID WP_000221869.1
Coordinates 2693..2980 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag AW84_RS24325 Protein ID WP_001132897.1
Coordinates 2445..2696 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AW84_RS24310 453..1484 + 1032 WP_000907868.1 replication initiation protein -
AW84_RS24325 2445..2696 + 252 WP_001132897.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
AW84_RS24330 2693..2980 + 288 WP_000221869.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
AW84_RS24340 3286..4453 - 1168 Protein_3 IS91 family transposase -
AW84_RS24345 4457..4726 - 270 WP_001371878.1 hypothetical protein -
AW84_RS24350 4797..4979 + 183 Protein_5 helix-turn-helix domain-containing protein -
AW84_RS24355 5672..5914 + 243 WP_071781016.1 Dabb family protein -
AW84_RS24360 6011..6739 + 729 WP_021555209.1 hypothetical protein -
AW84_RS24365 6807..7307 + 501 WP_021555210.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..96768 96768


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Metal-sensitive transcriptional repressor

(14-92)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 12322.73 Da        Isoelectric Point: 12.7777

>T89923 WP_000221869.1 NZ_CP025239:2693-2980 [Salmonella enterica subsp. enterica serovar Newport str.]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKKKK

Download         Length: 288 bp

>T89923 NZ_CP025239:2693-2980 [Salmonella enterica subsp. enterica serovar Newport str.]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 10784.64 Da        Isoelectric Point: 12.7191

>AT89923 WP_001132897.1 NZ_CP025239:2445-2696 [Salmonella enterica subsp. enterica serovar Newport str.]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKK

Download         Length: 252 bp

>AT89923 NZ_CP025239:2445-2696 [Salmonella enterica subsp. enterica serovar Newport str.]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References