Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 903809..903954 | Replicon | chromosome |
| Accession | NZ_CP025211 | ||
| Organism | Klebsiella pneumoniae strain HZW25 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 903845..903947 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 903809..903954 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CW753_RS04380 (CW753_04350) | 898939..900999 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| CW753_RS04385 (CW753_04355) | 901003..901662 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| CW753_RS04390 (CW753_04360) | 901741..901971 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CW753_RS04395 (CW753_04365) | 902084..902458 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CW753_RS04400 (CW753_04370) | 902462..903331 | + | 870 | WP_023280292.1 | copper homeostasis membrane protein CopD | - |
| CW753_RS04405 (CW753_04375) | 903348..903686 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 903809..903954 | - | 146 | - | - | Antitoxin |
| - | 903845..903947 | + | 103 | - | - | Toxin |
| CW753_RS28775 | 904323..904466 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| CW753_RS04415 (CW753_04385) | 904571..905539 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CW753_RS04420 (CW753_04390) | 905696..906349 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| CW753_RS04425 (CW753_04395) | 906346..906537 | - | 192 | WP_002911395.1 | YebW family protein | - |
| CW753_RS04430 (CW753_04400) | 906635..906874 | - | 240 | WP_002911393.1 | YebV family protein | - |
| CW753_RS04435 (CW753_04405) | 906990..908422 | - | 1433 | Protein_832 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T89870 NZ_CP025211:903845-903947 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT89870 NZ_CP025211:c903954-903809 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
