Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3396590..3396735 | Replicon | chromosome |
| Accession | NZ_CP025140 | ||
| Organism | Klebsiella pneumoniae strain KP1768 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3396597..3396699 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3396590..3396735 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXB24_RS17290 | 3392122..3393555 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CXB24_RS17295 | 3393671..3393910 | + | 240 | WP_002911393.1 | YebV family protein | - |
| CXB24_RS17300 | 3394008..3394199 | + | 192 | WP_002911395.1 | YebW family protein | - |
| CXB24_RS17305 | 3394196..3394849 | - | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| CXB24_RS17310 | 3395006..3395974 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CXB24_RS29510 | 3396079..3396222 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3396590..3396735 | + | 146 | - | - | Antitoxin |
| - | 3396597..3396699 | - | 103 | - | - | Toxin |
| CXB24_RS17320 | 3396858..3397196 | - | 339 | WP_002911404.1 | YebY family protein | - |
| CXB24_RS17325 | 3397213..3398082 | - | 870 | WP_032435031.1 | copper homeostasis membrane protein CopD | - |
| CXB24_RS17330 | 3398086..3398460 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CXB24_RS17335 | 3398573..3398803 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CXB24_RS17340 | 3398882..3399541 | + | 660 | WP_032435029.1 | exodeoxyribonuclease X | - |
| CXB24_RS17345 | 3399545..3401605 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T89796 NZ_CP025140:c3396699-3396597 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT89796 NZ_CP025140:3396590-3396735 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
