Detailed information of TA system TA089694

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): hicAB/HicA-HicB
• Location: 2225678..2226272
• Replicon: chromosome
• Accession: NZ_CP025067
• Organism: Bordetella parapertussis strain B271

Toxin (Protein)

• Gene name: hicA
• Uniprot ID: K0M8J0
• Locus tag: CWR62_RS10615
• Protein ID: WP_010928352.1
• Coordinates: 2226090..2226272 (-)
• Length: 61 a.a.

Antitoxin (Protein)

• Gene name: hicB
• Uniprot ID: K0MFV7
• Locus tag: CWR62_RS10610
• Protein ID: WP_010928351.1
• Coordinates: 2225678..2226067 (-)
• Length: 130 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CWR62_RS10585	2221521..2222561	+	1041	WP_003809635.1	phosphate ABC transporter substrate-binding protein PstS	-
CWR62_RS10590	2222696..2223712	+	1017	WP_010928350.1	phosphate ABC transporter permease subunit PstC	-
CWR62_RS10595	2223734..2224591	+	858	WP_003809638.1	phosphate ABC transporter permease PstA	-
CWR62_RS10600	2224636..2225412	+	777	WP_033448479.1	phosphate ABC transporter ATP-binding protein PstB	-
CWR62_RS10610	2225678..2226067	-	390	WP_010928351.1	type II toxin-antitoxin system HicB family antitoxin	Antitoxin
CWR62_RS10615	2226090..2226272	-	183	WP_010928352.1	type II toxin-antitoxin system HicA family toxin	Toxin
CWR62_RS10620	2226680..2227378	+	699	WP_003809653.1	gluconate 2-dehydrogenase subunit 3 family protein	-
CWR62_RS10625	2227382..2229151	+	1770	WP_010928353.1	GMC family oxidoreductase	-
CWR62_RS10630	2229162..2230517	+	1356	WP_003809657.1	cytochrome c	-
CWR62_RS10635	2230529..2231269	-	741	WP_003809659.1	carbonic anhydrase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• HicA mRNA interferase family (4-59)

Antitoxin

• HicB-like antitoxin of toxin-antitoxin system (3-122)

Sequences

Toxin

Protein

• Length: 61 a.a.
• Molecular weight: 6750.76 Da
• Isoelectric Point: 11.4018

>T89694 WP_010928352.1 NZ_CP025067:c2226272-2226090 [Bordetella parapertussis]
MNSTDLIQQPKADGWYRVHTVGSHHQYKHPTKPGKVTVPHPRKGLPTATQRSILKQAGLR

Nucleotide

• Length: 183 bp

>T89694 NZ_CP025067:c2226272-2226090 [Bordetella parapertussis]
ATGAACAGCACAGACCTGATCCAGCAACCGAAGGCCGACGGCTGGTATCGCGTGCATACCGTGGGTTCACACCACCAGTA
CAAGCACCCGACCAAGCCCGGCAAGGTCACCGTGCCGCATCCCAGGAAGGGCCTGCCGACAGCGACACAGCGCAGCATCC
TTAAGCAAGCCGGCCTGCGATAA

Antitoxin

Protein

• Length: 130 a.a.
• Molecular weight: 14270.92 Da
• Isoelectric Point: 4.3014

>AT89694 WP_010928351.1 NZ_CP025067:c2226067-2225678 [Bordetella parapertussis]
MLYPIHVSKDEGSAYGAAFPDFPGCFAAADELQDLPRAAQEAVEAHFYGETERIPAPSAPEAWANDEDYQGGYWMMVDID
LSKVNTKAVRLNISLPENLVHRIDEEAKARRLSRSAFLAMAAEHEMADA

Nucleotide

• Length: 390 bp

>AT89694 NZ_CP025067:c2226067-2225678 [Bordetella parapertussis]
ATGCTCTACCCGATCCATGTTTCCAAAGACGAAGGCAGCGCCTACGGGGCCGCCTTCCCTGATTTTCCCGGCTGCTTTGC
AGCCGCCGATGAACTCCAGGACCTCCCCCGCGCGGCGCAGGAAGCCGTTGAGGCGCACTTCTACGGAGAGACCGAGCGTA
TCCCCGCCCCGTCCGCCCCTGAAGCGTGGGCCAACGATGAGGACTATCAAGGCGGCTATTGGATGATGGTCGATATCGAC
CTGTCGAAGGTCAACACGAAGGCCGTGCGGCTCAACATCAGCCTGCCGGAAAACCTGGTTCACCGTATCGACGAGGAAGC
CAAGGCACGACGCCTTTCGCGCTCAGCGTTTCTGGCCATGGCTGCGGAGCACGAAATGGCCGACGCCTAG

Structures

Toxin

• AlphaFold DB: K0M8J0

Antitoxin

• AlphaFold DB: K0MFV7