Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2130851..2130996 | Replicon | chromosome |
| Accession | NZ_CP025037 | ||
| Organism | Klebsiella pneumoniae strain NU-CRE047 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2130887..2130989 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2130851..2130996 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CWQ24_RS10620 | 2125981..2128041 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| CWQ24_RS10625 | 2128045..2128704 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| CWQ24_RS10630 | 2128783..2129013 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CWQ24_RS10635 | 2129126..2129500 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CWQ24_RS10640 | 2129504..2130373 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| CWQ24_RS10645 | 2130390..2130728 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2130851..2130996 | - | 146 | - | - | Antitoxin |
| - | 2130887..2130989 | + | 103 | - | - | Toxin |
| CWQ24_RS31720 | 2131364..2131507 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| CWQ24_RS10655 | 2131612..2132580 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CWQ24_RS10660 | 2132737..2133390 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| CWQ24_RS10665 | 2133387..2133578 | - | 192 | WP_002911395.1 | YebW family protein | - |
| CWQ24_RS10670 | 2133676..2133915 | - | 240 | WP_002911393.1 | YebV family protein | - |
| CWQ24_RS10675 | 2134031..2135464 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T89566 NZ_CP025037:2130887-2130989 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT89566 NZ_CP025037:c2130996-2130851 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
