Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4475806..4475957 | Replicon | chromosome |
| Accession | NZ_CP025034 | ||
| Organism | Enterobacter sp. SGAir0187 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4475841..4475944 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4475806..4475957 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CWR52_RS21375 | 4472289..4472951 | - | 663 | WP_104950697.1 | exodeoxyribonuclease X | - |
| CWR52_RS21380 | 4472976..4473626 | - | 651 | WP_104950698.1 | carbon-nitrogen hydrolase family protein | - |
| CWR52_RS21385 | 4473737..4473967 | - | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| CWR52_RS21390 | 4474105..4474476 | + | 372 | WP_048029432.1 | CopC domain-containing protein YobA | - |
| CWR52_RS21395 | 4474478..4475347 | + | 870 | WP_104950699.1 | copper homeostasis membrane protein CopD | - |
| CWR52_RS21400 | 4475364..4475702 | + | 339 | WP_048029434.1 | YebY family protein | - |
| - | 4475806..4475957 | - | 152 | - | - | Antitoxin |
| - | 4475841..4475944 | + | 104 | - | - | Toxin |
| CWR52_RS21405 | 4476109..4477050 | - | 942 | WP_104950700.1 | VirK/YbjX family protein | - |
| CWR52_RS21410 | 4477228..4477872 | + | 645 | WP_104950701.1 | protein-serine/threonine phosphatase | - |
| CWR52_RS21415 | 4477907..4478146 | - | 240 | WP_008500472.1 | YebV family protein | - |
| CWR52_RS21420 | 4478253..4479695 | - | 1443 | WP_104950702.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T89554 NZ_CP025034:4475841-4475944 [Enterobacter sp. SGAir0187]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT89554 NZ_CP025034:c4475957-4475806 [Enterobacter sp. SGAir0187]
CTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
