Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2387610..2387692 Replicon chromosome
Accession NZ_CP025003
Organism Dickeya fangzhongdai strain DSM 101947

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2387612..2387692 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2387610..2387692 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CVE23_RS10735 2383782..2385155 - 1374 WP_167389549.1 pectate lyase -
CVE23_RS10740 2385852..2387048 + 1197 WP_100849517.1 hypothetical protein -
- 2387610..2387692 + 83 - - Antitoxin
- 2387612..2387692 - 81 - - Toxin
CVE23_RS10745 2387862..2388200 - 339 WP_038918972.1 YebY family protein -
CVE23_RS10750 2388715..2389158 + 444 WP_100849518.1 hypothetical protein -
CVE23_RS10755 2389501..2389749 + 249 WP_100849519.1 GlsB/YeaQ/YmgE family stress response membrane protein -
CVE23_RS10760 2389864..2391606 - 1743 WP_100849520.1 ABC transporter permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 81 bp

>T89460 NZ_CP025003:c2387692-2387612 [Dickeya fangzhongdai]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T

Antitoxin


Download         Length: 83 bp

>AT89460 NZ_CP025003:2387610-2387692 [Dickeya fangzhongdai]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References