Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /BrnT(toxin)
Location 567708..568209 Replicon chromosome
Accession NZ_CP025000
Organism Idiomarina sp. X4

Toxin (Protein)


Gene name - Uniprot ID -
Locus tag CWC33_RS02785 Protein ID WP_100690689.1
Coordinates 567943..568209 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID -
Locus tag CWC33_RS02780 Protein ID WP_100690688.1
Coordinates 567708..567956 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CWC33_RS02760 563341..563865 - 525 WP_100690684.1 hypothetical protein -
CWC33_RS02765 564033..565610 - 1578 WP_100690685.1 glutamine-hydrolyzing GMP synthase -
CWC33_RS02770 565622..567091 - 1470 WP_100690686.1 IMP dehydrogenase -
CWC33_RS02775 567322..567687 - 366 WP_100690687.1 hypothetical protein -
CWC33_RS02780 567708..567956 - 249 WP_100690688.1 CopG family transcriptional regulator Antitoxin
CWC33_RS02785 567943..568209 - 267 WP_100690689.1 BrnT family toxin Toxin
CWC33_RS02790 568358..569575 - 1218 WP_100690690.1 hypothetical protein -
CWC33_RS02795 569765..571519 + 1755 WP_100690691.1 hypothetical protein -
CWC33_RS02800 571659..572840 - 1182 WP_100690692.1 BCCT family transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(6-81)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10475.06 Da        Isoelectric Point: 10.0690

>T89442 WP_100690689.1 NZ_CP025000:c568209-567943 [Idiomarina sp. X4]
MLKFEFDSGKSLSNLQKHGIDFYSAQHLWNDSELLEIPAKTKDEKRYLIIAKYKGKHWSAVVTYRREVIRIISVRRSRIS
EVKLYESE

Download         Length: 267 bp

>T89442 NZ_CP025000:c568209-567943 [Idiomarina sp. X4]
ATGTTGAAGTTTGAATTTGATAGCGGCAAGAGTTTATCAAACCTCCAAAAGCATGGGATTGATTTTTATTCAGCTCAACA
TCTATGGAATGACTCTGAGCTGCTTGAAATTCCAGCTAAAACAAAAGATGAGAAGCGTTATTTAATAATAGCCAAGTACA
AGGGAAAGCACTGGTCAGCAGTAGTCACTTATCGGCGTGAGGTTATTAGAATAATATCTGTGCGGCGCTCAAGGATTAGT
GAGGTGAAGCTTTATGAAAGCGAGTGA

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9778.11 Da        Isoelectric Point: 4.6475

>AT89442 WP_100690688.1 NZ_CP025000:c567956-567708 [Idiomarina sp. X4]
MKASEFDEKFDSDEDVIDELEFEKAKRPMRKQKRVNVDFPEWMLESLDEEAARIGVTRQSIIKVWLAERLEQIEKHNIGK
QV

Download         Length: 249 bp

>AT89442 NZ_CP025000:c567956-567708 [Idiomarina sp. X4]
ATGAAAGCGAGTGAATTTGACGAAAAGTTTGACTCTGACGAAGACGTTATAGATGAACTTGAGTTTGAAAAGGCTAAAAG
ACCTATGCGTAAACAAAAGCGCGTGAATGTTGATTTTCCTGAATGGATGCTTGAGTCTTTGGATGAGGAAGCAGCGCGTA
TTGGGGTGACTCGCCAGTCAATTATTAAAGTTTGGCTGGCAGAGCGATTAGAGCAAATCGAAAAGCATAATATTGGGAAA
CAAGTGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References