Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4422387..4422658 | Replicon | chromosome |
| Accession | NZ_CP024978 | ||
| Organism | Escherichia coli strain CV839-15 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4422517..4422620 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4422387..4422658 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CV83915_RS26335 | 4418942..4419604 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CV83915_RS26340 | 4419628..4420284 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CV83915_RS26345 | 4420386..4420616 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CV83915_RS26350 | 4420755..4421129 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CV83915_RS26355 | 4421133..4422005 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| CV83915_RS26360 | 4422018..4422359 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 4422387..4422658 | - | 272 | - | - | Antitoxin |
| - | 4422517..4422620 | + | 104 | - | - | Toxin |
| CV83915_RS26365 | 4422755..4423411 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| CV83915_RS26370 | 4423412..4423603 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CV83915_RS26375 | 4423708..4423944 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CV83915_RS26380 | 4424062..4425501 | - | 1440 | WP_024191489.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T89407 NZ_CP024978:4422517-4422620 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT89407 NZ_CP024978:c4422658-4422387 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
