Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1872396..1872595 | Replicon | chromosome |
| Accession | NZ_CP024908 | ||
| Organism | Enterobacter hormaechei subsp. xiangfangensis strain OSUKPC4_L | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1872489..1872592 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1872396..1872595 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CUN65_RS09330 | 1868933..1869595 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| CUN65_RS09335 | 1869620..1870270 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| CUN65_RS09340 | 1870382..1870612 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| CUN65_RS09345 | 1870750..1871121 | + | 372 | WP_023314337.1 | CopC domain-containing protein YobA | - |
| CUN65_RS09350 | 1871123..1871992 | + | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
| CUN65_RS09355 | 1872009..1872347 | + | 339 | WP_032609509.1 | YebY family protein | - |
| - | 1872396..1872595 | - | 200 | - | - | Antitoxin |
| CUN65_RS09360 | 1872473..1872670 | - | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 1872489..1872592 | + | 104 | - | - | Toxin |
| CUN65_RS09365 | 1872716..1873696 | - | 981 | WP_003859879.1 | VirK/YbjX family protein | - |
| CUN65_RS09370 | 1873864..1874508 | + | 645 | WP_023324865.1 | protein-serine/threonine phosphatase | - |
| CUN65_RS09375 | 1874543..1874782 | - | 240 | WP_003859885.1 | YebV family protein | - |
| CUN65_RS09380 | 1874889..1876352 | - | 1464 | WP_032609505.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T89244 NZ_CP024908:1872489-1872592 [Enterobacter hormaechei subsp. xiangfangensis]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT89244 NZ_CP024908:c1872595-1872396 [Enterobacter hormaechei subsp. xiangfangensis]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
