Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | tacAT/DUF1778(antitoxin) |
| Location | 4564265..4565064 | Replicon | chromosome |
| Accession | NZ_CP024901 | ||
| Organism | Photorhabdus laumondii subsp. laumondii strain TT01 | ||
Toxin (Protein)
| Gene name | TacT3 | Uniprot ID | Q7N0J4 |
| Locus tag | PluTT01m_RS20010 | Protein ID | WP_011148028.1 |
| Coordinates | 4564540..4565064 (+) | Length | 175 a.a. |
Antitoxin (Protein)
| Gene name | TacA3 | Uniprot ID | Q7N0J5 |
| Locus tag | PluTT01m_RS20005 | Protein ID | WP_011148027.1 |
| Coordinates | 4564265..4564543 (+) | Length | 93 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PluTT01m_RS19990 | 4560485..4560763 | + | 279 | WP_011148023.1 | exodeoxyribonuclease VII small subunit | - |
| PluTT01m_RS19995 | 4560768..4561685 | + | 918 | WP_011148024.1 | (2E,6E)-farnesyl diphosphate synthase | - |
| PluTT01m_RS20000 | 4561748..4563613 | + | 1866 | WP_011148025.1 | 1-deoxy-D-xylulose-5-phosphate synthase | - |
| PluTT01m_RS20005 | 4564265..4564543 | + | 279 | WP_011148027.1 | DUF1778 domain-containing protein | Antitoxin |
| PluTT01m_RS20010 | 4564540..4565064 | + | 525 | WP_011148028.1 | N-acetyltransferase | Toxin |
| PluTT01m_RS20015 | 4565205..4565974 | + | 770 | Protein_3825 | IS982 family transposase | - |
| PluTT01m_RS20020 | 4566140..4566462 | - | 323 | Protein_3826 | type II toxin-antitoxin system YafQ family toxin | - |
| PluTT01m_RS20025 | 4566434..4566706 | - | 273 | WP_011148029.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| PluTT01m_RS20035 | 4566986..4567477 | - | 492 | WP_011148030.1 | phosphatidylglycerophosphatase A | - |
| PluTT01m_RS20040 | 4567470..4568459 | - | 990 | WP_011148031.1 | thiamine-phosphate kinase | - |
| PluTT01m_RS20045 | 4568560..4568976 | - | 417 | WP_011148032.1 | transcription antitermination factor NusB | - |
| PluTT01m_RS20050 | 4569003..4569473 | - | 471 | WP_011148033.1 | 6,7-dimethyl-8-ribityllumazine synthase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 175 a.a. Molecular weight: 18864.82 Da Isoelectric Point: 9.3787
>T89217 WP_011148028.1 NZ_CP024901:4564540-4565064 [Photorhabdus laumondii subsp. laumondii]
MMLPIWHEEPIGKHHDRGAFDCGDEALNQFLHRHARQSHEKGGAKTYLAVSKNNGTVLGYYSLSPASIAYERAPEVIKRG
LARHEVPVFRLGRLAIDLSVQSQGLGGQLLLAAGRRCLLVAAQAGGVALLIDAKNERVAEWYASYGAIPLLDAHLSLLLP
FKTIHAALVTAGKL
MMLPIWHEEPIGKHHDRGAFDCGDEALNQFLHRHARQSHEKGGAKTYLAVSKNNGTVLGYYSLSPASIAYERAPEVIKRG
LARHEVPVFRLGRLAIDLSVQSQGLGGQLLLAAGRRCLLVAAQAGGVALLIDAKNERVAEWYASYGAIPLLDAHLSLLLP
FKTIHAALVTAGKL
Download Length: 525 bp
>T89217 NZ_CP024901:4564540-4565064 [Photorhabdus laumondii subsp. laumondii]
ATGATGCTACCAATCTGGCACGAAGAACCTATAGGCAAACATCATGATCGTGGTGCTTTTGACTGTGGTGATGAGGCGTT
GAATCAGTTTTTACATCGCCATGCAAGGCAGAGCCATGAGAAAGGTGGGGCAAAAACCTACCTTGCAGTTAGCAAGAACA
ATGGAACGGTATTAGGTTACTACAGTCTAAGTCCCGCTTCTATTGCTTATGAACGTGCACCGGAAGTGATTAAACGTGGT
CTGGCTCGACATGAAGTGCCAGTATTTCGGCTTGGCCGTCTGGCTATAGATCTTTCAGTACAGAGTCAAGGACTCGGTGG
TCAGTTGTTGCTAGCCGCTGGTCGGCGCTGTTTATTGGTGGCCGCACAGGCTGGCGGGGTTGCATTGCTGATTGATGCCA
AGAATGAGCGTGTTGCCGAGTGGTACGCCAGCTATGGTGCTATTCCGCTATTAGATGCCCACCTATCTTTGCTGTTACCA
TTCAAAACAATACATGCAGCTCTAGTCACTGCGGGGAAGCTTTAA
ATGATGCTACCAATCTGGCACGAAGAACCTATAGGCAAACATCATGATCGTGGTGCTTTTGACTGTGGTGATGAGGCGTT
GAATCAGTTTTTACATCGCCATGCAAGGCAGAGCCATGAGAAAGGTGGGGCAAAAACCTACCTTGCAGTTAGCAAGAACA
ATGGAACGGTATTAGGTTACTACAGTCTAAGTCCCGCTTCTATTGCTTATGAACGTGCACCGGAAGTGATTAAACGTGGT
CTGGCTCGACATGAAGTGCCAGTATTTCGGCTTGGCCGTCTGGCTATAGATCTTTCAGTACAGAGTCAAGGACTCGGTGG
TCAGTTGTTGCTAGCCGCTGGTCGGCGCTGTTTATTGGTGGCCGCACAGGCTGGCGGGGTTGCATTGCTGATTGATGCCA
AGAATGAGCGTGTTGCCGAGTGGTACGCCAGCTATGGTGCTATTCCGCTATTAGATGCCCACCTATCTTTGCTGTTACCA
TTCAAAACAATACATGCAGCTCTAGTCACTGCGGGGAAGCTTTAA
Antitoxin
Download Length: 93 a.a. Molecular weight: 10343.93 Da Isoelectric Point: 5.1133
>AT89217 WP_011148027.1 NZ_CP024901:4564265-4564543 [Photorhabdus laumondii subsp. laumondii]
MPQIPVETNDRMSLRIASEEKSLLMRAAALQHTNLTEFVLRNVMPAARKVIDENERLELTERDSLHVLDLLDNPPAPNDK
LLAAAFALPKQS
MPQIPVETNDRMSLRIASEEKSLLMRAAALQHTNLTEFVLRNVMPAARKVIDENERLELTERDSLHVLDLLDNPPAPNDK
LLAAAFALPKQS
Download Length: 279 bp
>AT89217 NZ_CP024901:4564265-4564543 [Photorhabdus laumondii subsp. laumondii]
ATGCCTCAGATCCCAGTAGAAACTAACGACCGAATGTCGCTACGTATTGCCTCAGAAGAAAAGTCGCTGTTGATGCGTGC
AGCCGCTTTACAACATACCAACTTGACTGAGTTCGTGCTCCGCAATGTGATGCCAGCAGCACGGAAAGTTATCGACGAGA
ACGAACGGCTGGAGCTGACCGAAAGAGATAGTTTGCATGTTCTGGATCTTTTGGATAACCCACCGGCACCCAATGATAAA
TTGTTGGCCGCAGCATTTGCCTTGCCGAAACAATCATGA
ATGCCTCAGATCCCAGTAGAAACTAACGACCGAATGTCGCTACGTATTGCCTCAGAAGAAAAGTCGCTGTTGATGCGTGC
AGCCGCTTTACAACATACCAACTTGACTGAGTTCGTGCTCCGCAATGTGATGCCAGCAGCACGGAAAGTTATCGACGAGA
ACGAACGGCTGGAGCTGACCGAAAGAGATAGTTTGCATGTTCTGGATCTTTTGGATAACCCACCGGCACCCAATGATAAA
TTGTTGGCCGCAGCATTTGCCTTGCCGAAACAATCATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A6L9JMG1 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A6L9JLN0 |