Detailed information of TA system TA089189

Bioinformatically predicted

Overview

TA module

• Type: III
• Classification (family/domain): tenpIN/-
• Location: 5495449..5495988
• Replicon: chromosome
• Accession: NZ_CP024900
• Organism: Photorhabdus laumondii subsp. laumondii strain DJC

Toxin (Protein)

• Gene name: tenpN
• Uniprot ID: Q7MY23
• Locus tag: PluDJC_RS24590
• Protein ID: WP_011148929.1
• Coordinates: 5495449..5495880 (-)
• Length: 144 a.a.

Antitoxin (RNA)

Gene name	tenpI
Locus tag	-
Coordinates	5495939..5495988 (-)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
PluDJC_RS24565	5490945..5491403	+	459	WP_011148924.1	dUTP diphosphatase	-
PluDJC_RS24570	5491644..5492243	+	600	WP_011148925.1	nucleoid occlusion factor SlmA	-
PluDJC_RS24575	5492303..5492944	-	642	WP_011148926.1	orotate phosphoribosyltransferase	-
PluDJC_RS24580	5493029..5493757	-	729	WP_011148927.1	ribonuclease PH	-
PluDJC_RS24585	5493884..5494747	+	864	WP_011148928.1	YicC family protein	-
PluDJC_RS24590	5495449..5495880	-	432	WP_011148929.1	hypothetical protein	Toxin
-	5495939..5495988	-	50	NuclAT_1	-	Antitoxin
-	5495939..5495988	-	50	NuclAT_1	-	Antitoxin
-	5495939..5495988	-	50	NuclAT_1	-	Antitoxin
-	5495939..5495988	-	50	NuclAT_1	-	Antitoxin
-	5495989..5496038	-	50	NuclAT_0	-	-
-	5495989..5496038	-	50	NuclAT_0	-	-
-	5495989..5496038	-	50	NuclAT_0	-	-
-	5495989..5496038	-	50	NuclAT_0	-	-
PluDJC_RS24595	5496108..5496302	-	195	WP_011148930.1	hypothetical protein	-
PluDJC_RS24600	5496938..5497972	+	1035	WP_071824185.1	reverse transcriptase family protein	-
PluDJC_RS24605	5497962..5498623	+	662	Protein_4712	retron Ec48 family effector membrane protein	-
PluDJC_RS24620	5499201..5500151	-	951	WP_011148935.1	hypothetical protein	-
PluDJC_RS24625	5500424..5500507	+	84	WP_071824186.1	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Sequences

Toxin

Protein

• Length: 144 a.a.
• Molecular weight: 16736.27 Da
• Isoelectric Point: 8.2240

>T89189 WP_011148929.1 NZ_CP024900:c5495880-5495449 [Photorhabdus laumondii subsp. laumondii]
MILRQIKQDVYNRLCENRPQVLEKNRGYGVISITLNGLTFAVPLRSNLNHPNGFKTIFIKEKKCWSGLDYSKALLIDVDD
LEPQAFKLKMEKEYEKLKANEKKIEVEFGAYVQGYIEYINTGEGDDRCYKFTTLQYFHRDLGL

Nucleotide

• Length: 432 bp

>T89189 NZ_CP024900:c5495880-5495449 [Photorhabdus laumondii subsp. laumondii]
ATGATATTGCGCCAGATCAAACAAGATGTCTACAACAGGCTTTGTGAAAATAGACCGCAAGTTTTAGAAAAAAATAGGGG
GTATGGCGTTATATCGATTACTTTAAACGGACTTACATTCGCAGTCCCTTTACGAAGTAATCTAAATCATCCTAATGGGT
TCAAGACTATCTTCATAAAGGAAAAAAAATGCTGGAGTGGCTTAGATTACTCAAAAGCTTTACTCATTGATGTTGATGAT
CTAGAACCACAAGCTTTTAAGCTAAAAATGGAAAAAGAGTATGAAAAGTTAAAAGCAAACGAAAAAAAGATCGAGGTGGA
ATTTGGGGCTTATGTTCAAGGATACATTGAATACATAAATACTGGTGAGGGTGATGATCGTTGTTATAAATTTACTACAC
TCCAGTATTTCCATAGAGATTTGGGCTTATAG

Antitoxin

Nucleotide

• Length: 50 bp

>AT89189 NZ_CP024900:c5495988-5495939 [Photorhabdus laumondii subsp. laumondii]
GATTATGTGGCGGTAGAGGCATCCCCACGTTAAATAGAACAACCTCATTG

Structures

Toxin

• AlphaFold DB: A0A6L9JUM7

Antitoxin