Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1394775..1395046 | Replicon | chromosome |
| Accession | NZ_CP024889 | ||
| Organism | Escherichia coli strain AR_0019 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1394905..1395008 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1394775..1395046 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM346_RS07615 | 1391330..1391992 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AM346_RS07620 | 1392016..1392672 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| AM346_RS07625 | 1392774..1393004 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM346_RS07630 | 1393143..1393517 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| AM346_RS07635 | 1393521..1394393 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| AM346_RS07640 | 1394406..1394747 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1394775..1395046 | - | 272 | - | - | Antitoxin |
| - | 1394905..1395008 | + | 104 | - | - | Toxin |
| AM346_RS07645 | 1395143..1395799 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| AM346_RS07650 | 1395800..1395991 | - | 192 | WP_000457842.1 | YebW family protein | - |
| AM346_RS07655 | 1396096..1396332 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AM346_RS07660 | 1396450..1397889 | - | 1440 | WP_024198516.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T89137 NZ_CP024889:1394905-1395008 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT89137 NZ_CP024889:c1395046-1394775 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
