Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1189766..1190034 Replicon chromosome
Accession NZ_CP024886
Organism Escherichia coli strain AR_0017

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1189804..1189906 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1189766..1190034 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AM344_RS06470 1186927..1188366 + 1440 WP_024187959.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
AM344_RS06475 1188484..1188720 + 237 WP_001295499.1 DUF1480 family protein -
AM344_RS06480 1188825..1189070 + 246 WP_050517955.1 YebW family protein -
AM344_RS06485 1189013..1189669 - 657 WP_000812743.1 protein-serine/threonine phosphatase -
- 1189766..1190034 + 269 - - Antitoxin
- 1189804..1189906 - 103 - - Toxin
AM344_RS06490 1190064..1190405 - 342 WP_000976472.1 YebY family protein -
AM344_RS06495 1190418..1191290 - 873 WP_000879320.1 copper homeostasis membrane protein CopD -
AM344_RS06500 1191294..1191668 - 375 WP_000168747.1 CopC domain-containing protein YobA -
AM344_RS06505 1191807..1192037 + 231 WP_000916763.1 DNA polymerase III subunit theta -
AM344_RS06510 1192139..1192795 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein -
AM344_RS06515 1192819..1193481 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T89100 NZ_CP024886:c1189906-1189804 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT89100 NZ_CP024886:1189766-1190034 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References