Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4839037..4839175 | Replicon | chromosome |
| Accession | NZ_CP024885 | ||
| Organism | Klebsiella aerogenes strain AR_0009 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4839037..4839140 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4839037..4839175 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM336_RS24320 | 4834254..4836590 | + | 2337 | WP_032716232.1 | hypothetical protein | - |
| AM336_RS24325 | 4836626..4837090 | + | 465 | WP_196796173.1 | siphovirus Gp157 family protein | - |
| AM336_RS24330 | 4837120..4837512 | + | 393 | WP_125961766.1 | hypothetical protein | - |
| AM336_RS24335 | 4837579..4837851 | + | 273 | WP_071609883.1 | excisionase | - |
| AM336_RS24340 | 4837826..4838905 | + | 1080 | WP_032708609.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 4839037..4839140 | - | 104 | - | - | Toxin |
| - | 4839037..4839175 | + | 139 | - | - | Antitoxin |
| AM336_RS24345 | 4839297..4839638 | - | 342 | WP_015366010.1 | YebY family protein | - |
| AM336_RS24350 | 4839652..4840521 | - | 870 | WP_032705951.1 | copper homeostasis membrane protein CopD | - |
| AM336_RS24355 | 4840525..4840899 | - | 375 | WP_015366008.1 | CopC domain-containing protein YobA | - |
| AM336_RS24360 | 4841034..4841264 | + | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| AM336_RS24365 | 4841344..4842003 | + | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| AM336_RS24370 | 4842006..4844066 | - | 2061 | WP_032705952.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4780856..4844066 | 63210 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T89086 NZ_CP024885:c4839140-4839037 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 139 bp
>AT89086 NZ_CP024885:4839037-4839175 [Klebsiella aerogenes]
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
