Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3018857..3019003 | Replicon | chromosome |
| Accession | NZ_CP024883 | ||
| Organism | Klebsiella aerogenes strain AR_0007 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3018892..3018995 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3018857..3019003 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM334_RS14900 | 3013966..3016026 | + | 2061 | WP_015705949.1 | oligopeptidase B | - |
| AM334_RS14905 | 3016029..3016688 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| AM334_RS14910 | 3016768..3016998 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| AM334_RS14915 | 3017133..3017507 | + | 375 | WP_015366008.1 | CopC domain-containing protein YobA | - |
| AM334_RS14920 | 3017511..3018380 | + | 870 | WP_042893412.1 | copper homeostasis membrane protein CopD | - |
| AM334_RS14925 | 3018394..3018735 | + | 342 | WP_015705946.1 | YebY family protein | - |
| - | 3018857..3019003 | - | 147 | - | - | Antitoxin |
| - | 3018892..3018995 | + | 104 | - | - | Toxin |
| AM334_RS14930 | 3019123..3020076 | - | 954 | WP_100279670.1 | spore coat U domain-containing protein | - |
| AM334_RS14935 | 3020089..3022413 | - | 2325 | WP_045360584.1 | fimbrial biogenesis outer membrane usher protein | - |
| AM334_RS14940 | 3022416..3023165 | - | 750 | WP_045365658.1 | molecular chaperone | - |
| AM334_RS14945 | 3023183..3023701 | - | 519 | WP_015366014.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T89061 NZ_CP024883:3018892-3018995 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT89061 NZ_CP024883:c3019003-3018857 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
