Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1255349..1255492 | Replicon | chromosome |
| Accession | NZ_CP024881 | ||
| Organism | Citrobacter freundii strain AR_0022 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1255354..1255457 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1255349..1255492 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM349_RS06255 | 1252539..1253927 | + | 1389 | WP_003034944.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM349_RS06260 | 1254028..1254264 | + | 237 | WP_029139506.1 | DUF1480 family protein | - |
| AM349_RS06265 | 1254367..1254558 | + | 192 | WP_003034941.1 | YebW family protein | - |
| AM349_RS06270 | 1254559..1255200 | - | 642 | WP_032949476.1 | protein-serine/threonine phosphatase | - |
| - | 1255349..1255492 | + | 144 | - | - | Antitoxin |
| - | 1255354..1255457 | - | 104 | - | - | Toxin |
| AM349_RS06275 | 1255613..1255951 | - | 339 | WP_003034934.1 | YebY family protein | - |
| AM349_RS06280 | 1255972..1256844 | - | 873 | WP_032949522.1 | copper homeostasis membrane protein CopD | - |
| AM349_RS06285 | 1256848..1257222 | - | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| AM349_RS06290 | 1257366..1257596 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| AM349_RS06295 | 1257703..1258359 | + | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| AM349_RS06300 | 1258383..1259045 | + | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T89043 NZ_CP024881:c1255457-1255354 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT89043 NZ_CP024881:1255349-1255492 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
