Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3400560..3400706 | Replicon | chromosome |
| Accession | NZ_CP024880 | ||
| Organism | Klebsiella aerogenes strain AR_0018 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3400568..3400671 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3400560..3400706 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM345_RS16795 | 3395862..3396380 | + | 519 | WP_015366014.1 | spore coat U domain-containing protein | - |
| AM345_RS16800 | 3396398..3397147 | + | 750 | WP_015366013.1 | molecular chaperone | - |
| AM345_RS16805 | 3397150..3399474 | + | 2325 | WP_032705949.1 | fimbrial biogenesis outer membrane usher protein | - |
| AM345_RS16810 | 3399493..3400440 | + | 948 | WP_032706245.1 | spore coat U domain-containing protein | - |
| - | 3400560..3400706 | + | 147 | - | - | Antitoxin |
| - | 3400568..3400671 | - | 104 | - | - | Toxin |
| AM345_RS16815 | 3400828..3401169 | - | 342 | WP_015705946.1 | YebY family protein | - |
| AM345_RS16820 | 3401183..3402052 | - | 870 | WP_042893412.1 | copper homeostasis membrane protein CopD | - |
| AM345_RS16825 | 3402056..3402430 | - | 375 | WP_015366008.1 | CopC domain-containing protein YobA | - |
| AM345_RS16830 | 3402565..3402795 | + | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| AM345_RS16835 | 3402875..3403534 | + | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| AM345_RS16840 | 3403537..3405597 | - | 2061 | WP_032705952.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T89031 NZ_CP024880:c3400671-3400568 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT89031 NZ_CP024880:3400560-3400706 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
