Detailed information of TA system TA088972

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): hicAB/UPF0150(antitoxin)
• Location: 5083669..5084307
• Replicon: chromosome
• Accession: NZ_CP024862
• Organism: Escherichia coli strain AR_0015

Toxin (Protein)

• Gene name: hicA
• Uniprot ID: A0A0D8WF76
• Locus tag: AM342_RS26175
• Protein ID: WP_001306887.1
• Coordinates: 5084131..5084307 (-)
• Length: 59 a.a.

Antitoxin (Protein)

• Gene name: hicB
• Uniprot ID: -
• Locus tag: AM342_RS26170
• Protein ID: WP_001270286.1
• Coordinates: 5083669..5084085 (-)
• Length: 139 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
AM342_RS26150	5078821..5079762	-	942	WP_001251315.1	ABC transporter permease	-
AM342_RS26155	5079763..5080776	-	1014	WP_001523231.1	ABC transporter ATP-binding protein	-
AM342_RS26160	5080794..5081939	-	1146	WP_020233879.1	ABC transporter substrate-binding protein	-
AM342_RS26165	5082184..5083590	-	1407	WP_001523229.1	PLP-dependent aminotransferase family protein	-
AM342_RS26170	5083669..5084085	-	417	WP_001270286.1	type II toxin-antitoxin system antitoxin HicB	Antitoxin
AM342_RS26175	5084131..5084307	-	177	WP_001306887.1	type II toxin-antitoxin system mRNA interferase toxin HicA	Toxin
AM342_RS26180	5084529..5084759	+	231	WP_000494241.1	YncJ family protein	-
AM342_RS26185	5084851..5086812	-	1962	WP_024166512.1	23S rRNA 5-hydroxycytidine C2501 synthase	-
AM342_RS26190	5086885..5087421	-	537	WP_020233877.1	DNA-binding transcriptional regulator SutR	-
AM342_RS26195	5087474..5088685	+	1212	WP_023143671.1	BenE family transporter YdcO	-
AM342_RS26200	5088793..5089251	-	459	WP_000526135.1	IS200/IS605 family transposase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	flank	IS/Tn	-	-	5088793..5089251	458

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• HicA mRNA interferase family (5-57)

Antitoxin

• Cro/C1-type helix-turn-helix domain (91-134)

Sequences

Toxin

Protein

• Length: 59 a.a.
• Molecular weight: 6768.88 Da
• Isoelectric Point: 11.5336

>T88972 WP_001306887.1 NZ_CP024862:c5084307-5084131 [Escherichia coli]
VKQSEFRRWLESQGVDVANGSNHLKLRFRGRRSVMPRHPCDEIKEPLRKAILKQLGLS

Nucleotide

• Length: 177 bp

>T88972 NZ_CP024862:c5084307-5084131 [Escherichia coli]
GTGAAACAAAGCGAGTTCAGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAG
GTTTCGTGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAAC
AACTCGGTTTGAGTTAA

Antitoxin

Protein

• Length: 139 a.a.
• Molecular weight: 15246.63 Da
• Isoelectric Point: 4.7386

>AT88972 WP_001270286.1 NZ_CP024862:c5084085-5083669 [Escherichia coli]
MRYPVTLTPAPEGGYMVSFVDIPEALTQGETVAEAMEAAKDALLTAFDFYFEDNELIPLPSPLNSHDHFIEVPLSVASKV
LLLNAFLQSEITQQELARRIGKPKQEITRLFNLHHATKIDAVQLAAKALGKELSLVMV

Nucleotide

• Length: 417 bp

>AT88972 NZ_CP024862:c5084085-5083669 [Escherichia coli]
ATGCGTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGAC
CCAGGGCGAAACAGTTGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATA
ACGAGCTTATCCCGTTACCTTCGCCATTAAATAGTCACGATCACTTTATTGAAGTGCCTTTGAGCGTCGCCTCTAAGGTA
TTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGTTAGCCAGACGAATTGGCAAACCTAAACAGGAGAT
TACTCGCCTATTTAATTTGCACCATGCGACAAAAATCGACGCCGTCCAGCTCGCGGCAAAGGCGCTTGGCAAAGAGTTAT
CGCTGGTGATGGTTTAA

Structures

Toxin

• AlphaFold DB: A0A0D8WF76