Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4707188..4707459 | Replicon | chromosome |
| Accession | NZ_CP024859 | ||
| Organism | Escherichia coli strain AR_0014 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4707318..4707421 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4707188..4707459 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM341_RS23985 | 4703743..4704405 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AM341_RS23990 | 4704429..4705085 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| AM341_RS23995 | 4705187..4705417 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM341_RS24000 | 4705556..4705930 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AM341_RS24005 | 4705934..4706806 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| AM341_RS24010 | 4706819..4707160 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 4707188..4707459 | - | 272 | - | - | Antitoxin |
| - | 4707318..4707421 | + | 104 | - | - | Toxin |
| AM341_RS24015 | 4707556..4708212 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| AM341_RS24020 | 4708213..4708404 | - | 192 | WP_000457842.1 | YebW family protein | - |
| AM341_RS24025 | 4708509..4708745 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AM341_RS24030 | 4708863..4710302 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T88917 NZ_CP024859:4707318-4707421 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT88917 NZ_CP024859:c4707459-4707188 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
