Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3838490..3838761 | Replicon | chromosome |
| Accession | NZ_CP024851 | ||
| Organism | Escherichia coli strain AR_0006 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3838528..3838631 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3838490..3838761 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM333_RS19880 | 3835647..3837086 | + | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM333_RS19885 | 3837204..3837440 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AM333_RS19890 | 3837545..3837736 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AM333_RS19895 | 3837737..3838393 | - | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| - | 3838490..3838761 | + | 272 | - | - | Antitoxin |
| - | 3838528..3838631 | - | 104 | - | - | Toxin |
| AM333_RS19900 | 3838785..3839126 | - | 342 | WP_001520705.1 | YebY family protein | - |
| AM333_RS19905 | 3839139..3840011 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| AM333_RS19910 | 3840015..3840389 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| AM333_RS19915 | 3840528..3840758 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM333_RS19920 | 3840860..3841516 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| AM333_RS19925 | 3841540..3842202 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T88841 NZ_CP024851:c3838631-3838528 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT88841 NZ_CP024851:3838490-3838761 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
