Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) ykfI-yfjZ/CbtA-CbeA
Location 3835983..3836707 Replicon chromosome
Accession NZ_CP024842
Organism Pectobacterium versatile strain 3-2

Toxin (Protein)


Gene name ykfI Uniprot ID -
Locus tag OA04_RS17570 Protein ID WP_107333353.1
Coordinates 3836387..3836707 (+) Length 107 a.a.

Antitoxin (Protein)


Gene name yfjZ Uniprot ID -
Locus tag OA04_RS17565 Protein ID WP_107333352.1
Coordinates 3835983..3836318 (+) Length 112 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OA04_RS17535 3831932..3832807 + 876 WP_107333348.1 GTPase family protein -
OA04_RS17540 3833177..3833875 + 699 WP_107333349.1 DeoR family transcriptional regulator -
OA04_RS17545 3834057..3834626 + 570 WP_095994930.1 hypothetical protein -
OA04_RS17550 3834662..3835135 + 474 WP_107333350.1 hypothetical protein -
OA04_RS17555 3835152..3835385 + 234 WP_040034648.1 membrane protein -
OA04_RS17560 3835470..3835943 + 474 WP_107333351.1 DNA repair protein RadC -
OA04_RS17565 3835983..3836318 + 336 WP_107333352.1 type IV toxin-antitoxin system YeeU family antitoxin Antitoxin
OA04_RS17570 3836387..3836707 + 321 WP_107333353.1 TA system toxin CbtA family protein Toxin
OA04_RS17575 3836825..3837658 + 834 WP_107333354.1 DUF4942 domain-containing protein -
OA04_RS17590 3838575..3838994 + 420 WP_107333356.1 hypothetical protein -
OA04_RS17595 3839297..3840550 - 1254 WP_107333357.1 glutamate-5-semialdehyde dehydrogenase -
OA04_RS17600 3840561..3841664 - 1104 WP_103862922.1 glutamate 5-kinase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

CbtA toxin of type IV toxin-antitoxin system

(1-105)

Antitoxin

Antitoxin CbeA

(7-106)


Sequences

Toxin        


Download         Length: 107 a.a.        Molecular weight: 12118.86 Da        Isoelectric Point: 4.7768

>T88809 WP_107333353.1 NZ_CP024842:3836387-3836707 [Pectobacterium versatile]
MQTSPAIPPREDNPCPSPINVWQQLLTYLLEKHYGLTLNDIPFCEENVIQEHIDAGVTLVNAVNFLVEKYELVRIDRNGF
NWQEQSPFLTAVDILRARRATGLLKA

Download         Length: 321 bp

>T88809 NZ_CP024842:3836387-3836707 [Pectobacterium versatile]
ATGCAAACATCACCTGCAATCCCGCCACGGGAGGATAACCCCTGTCCGTCACCTATAAACGTCTGGCAACAACTACTGAC
CTACCTGCTGGAAAAGCACTACGGCCTGACGCTGAACGACATACCGTTCTGTGAGGAAAACGTGATTCAGGAGCATATCG
ATGCTGGCGTCACGCTAGTCAATGCCGTCAATTTTCTGGTGGAGAAATACGAACTGGTGCGTATCGATCGCAACGGCTTT
AACTGGCAGGAGCAATCGCCGTTTCTTACCGCCGTTGATATTCTCCGTGCCAGGCGTGCTACCGGCTTGCTCAAGGCATA
A

Antitoxin


Download         Length: 112 a.a.        Molecular weight: 12471.19 Da        Isoelectric Point: 6.4457

>AT88809 WP_107333352.1 NZ_CP024842:3835983-3836318 [Pectobacterium versatile]
MPSSDTPEWGLKCAVTPRFGARLVQEGNRLHYLADRASFIGMFSKTEARSLERSFPELIKQLEQKMRTGELNPRQQGCVT
LHCNEWTCEADTLGSVGYVYIVIYPSSAVAE

Download         Length: 336 bp

>AT88809 NZ_CP024842:3835983-3836318 [Pectobacterium versatile]
ATGCCATCATCGGATACCCCTGAATGGGGACTAAAATGTGCTGTCACGCCGCGATTCGGAGCCAGACTGGTTCAGGAAGG
TAACCGTCTGCACTATCTGGCAGACCGGGCCAGTTTTATCGGTATGTTCAGCAAAACAGAAGCCCGTAGTTTGGAACGCA
GTTTCCCTGAGTTGATTAAACAGTTGGAACAAAAAATGAGAACGGGTGAGCTAAATCCTCGCCAGCAGGGTTGTGTCACG
TTGCATTGCAACGAATGGACCTGTGAAGCCGATACACTGGGCAGCGTTGGCTACGTGTATATTGTTATTTATCCCTCTTC
TGCGGTAGCAGAATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References