Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) sdenTA/AbiEii(toxin)
Location 166175..167616 Replicon chromosome
Accession NZ_CP024842
Organism Pectobacterium versatile strain 3-2

Toxin (Protein)


Gene name sdenT Uniprot ID -
Locus tag OA04_RS00730 Protein ID WP_107332131.1
Coordinates 166729..167616 (+) Length 296 a.a.

Antitoxin (Protein)


Gene name sdenA Uniprot ID -
Locus tag OA04_RS00725 Protein ID WP_107332130.1
Coordinates 166175..166699 (+) Length 175 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OA04_RS00715 161896..163356 + 1461 WP_107333676.1 AAA family ATPase -
OA04_RS00720 163375..165855 + 2481 WP_107332129.1 restriction endonuclease-like protein -
OA04_RS00725 166175..166699 + 525 WP_107332130.1 hypothetical protein Antitoxin
OA04_RS00730 166729..167616 + 888 WP_107332131.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein Toxin
OA04_RS00735 167721..168584 - 864 WP_010300687.1 YicC family protein -
OA04_RS00740 168683..169591 - 909 WP_039542502.1 LysR family transcriptional regulator -
OA04_RS00745 169795..170742 - 948 WP_107332132.1 isoaspartyl peptidase/L-asparaginase -
OA04_RS00750 170799..171620 - 822 WP_014913737.1 M55 family metallopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Nucleotidyl transferase AbiEii toxin, Type IV TA system

(39-265)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 296 a.a.        Molecular weight: 33909.77 Da        Isoelectric Point: 5.7046

>T88795 WP_107332131.1 NZ_CP024842:166729-167616 [Pectobacterium versatile]
MLKQQIRQIVQSNPDYAAVTPVIEKEILHHDIIDVLIKQGVMQRLTFIGGTSLRMCYNSSRLSEDLDFNGGHDFQPSAFE
GLESEIQTYIQNKYETEVWVNKPSGEQQGDTVSWKISIVKDANRPDLPRQKMHIDVCAIPSFDIEKRPLINHYDIVVPTE
GILVPVQSLQETLADKLIALAYRARRIKPRDIWDIVWIKQRGIDLSKTLVEKKLTARQKQTEDFRQALSIQLAKLMSEDE
VRDDFNMEMSRFISKQIKERTLDNPAYWAYVQGEVHAIASELLNDGAPKNPFDMG

Download         Length: 888 bp

>T88795 NZ_CP024842:166729-167616 [Pectobacterium versatile]
ATGCTGAAGCAACAAATTCGCCAAATCGTCCAGTCAAACCCTGACTATGCCGCAGTGACACCCGTCATAGAAAAAGAGAT
CTTGCATCATGACATTATCGATGTGCTGATCAAACAGGGCGTCATGCAGCGGTTAACGTTTATTGGCGGCACCTCATTAC
GAATGTGTTACAACAGCAGCAGGCTATCAGAAGATCTTGATTTCAATGGTGGTCATGATTTCCAGCCCTCAGCGTTTGAG
GGGCTGGAGTCCGAAATCCAAACCTATATTCAGAACAAGTATGAAACCGAAGTTTGGGTAAACAAACCTTCTGGCGAGCA
GCAAGGGGATACCGTTTCTTGGAAAATTAGTATCGTAAAAGACGCTAATCGTCCTGATTTGCCACGGCAAAAAATGCATA
TTGACGTCTGTGCTATTCCGTCATTTGATATTGAAAAGCGCCCGCTAATCAATCATTACGACATCGTTGTTCCGACTGAA
GGGATCTTGGTTCCGGTACAGTCGTTACAAGAAACATTGGCCGATAAGTTGATCGCGTTAGCGTATCGGGCAAGACGTAT
TAAACCTCGTGATATCTGGGATATTGTTTGGATTAAGCAGCGCGGTATTGATTTATCCAAGACACTGGTTGAAAAGAAGC
TCACCGCCAGACAGAAGCAAACAGAAGACTTTCGACAGGCGCTGTCTATTCAGTTAGCCAAGCTAATGTCGGAAGATGAA
GTCCGTGACGACTTCAATATGGAAATGAGCCGTTTTATCTCTAAGCAAATTAAAGAGAGAACCCTCGATAATCCTGCATA
TTGGGCTTATGTTCAGGGCGAGGTACATGCCATCGCGTCTGAGTTACTGAATGACGGAGCACCAAAAAATCCATTTGATA
TGGGTTAG

Antitoxin


Download         Length: 175 a.a.        Molecular weight: 19352.48 Da        Isoelectric Point: 9.0504

>AT88795 WP_107332130.1 NZ_CP024842:166175-166699 [Pectobacterium versatile]
MAKSDELLNALAKSVNAGGGIHSVAELAFMQGVPCDSAFRKFLADCVKKGLLRRVVKGFYESVITPPEPETAIYKIIKKL
RSGVLNYISLESQLSHTGDISQVVMGRVTVVTKGRSGCFDTPYGVIEFTHTKKPVEQIAPNLYYDPDIKMYRAYKEQAIA
DLKHCQRNLHMLES

Download         Length: 525 bp

>AT88795 NZ_CP024842:166175-166699 [Pectobacterium versatile]
ATGGCTAAATCTGATGAGCTATTAAACGCGTTGGCTAAATCAGTGAACGCTGGCGGTGGCATTCACAGTGTAGCAGAGCT
GGCTTTTATGCAGGGTGTGCCTTGTGACTCAGCCTTTAGAAAGTTCCTGGCAGATTGCGTAAAGAAGGGGTTGCTAAGAC
GAGTAGTGAAAGGCTTCTATGAAAGTGTTATTACACCACCTGAGCCTGAGACTGCCATTTATAAAATCATCAAAAAGTTG
CGCAGTGGCGTATTGAACTACATCAGTTTAGAAAGTCAGCTCAGTCATACTGGTGATATTTCACAAGTTGTGATGGGTAG
AGTCACAGTGGTGACTAAAGGTCGAAGTGGTTGTTTTGATACGCCTTATGGCGTGATCGAGTTTACCCATACTAAAAAGC
CAGTCGAGCAAATTGCACCTAATTTGTACTATGACCCTGACATCAAAATGTATCGCGCATACAAGGAACAAGCGATTGCA
GATCTAAAGCACTGCCAGCGCAATCTACATATGTTGGAGAGCTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References