Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4233149..4233294 | Replicon | chromosome |
| Accession | NZ_CP024838 | ||
| Organism | Klebsiella pneumoniae strain CRKP-1215 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4233185..4233287 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4233149..4233294 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CU074_RS21115 | 4228279..4230339 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| CU074_RS21120 | 4230343..4231002 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| CU074_RS21125 | 4231081..4231311 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CU074_RS21130 | 4231424..4231798 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| CU074_RS21135 | 4231802..4232671 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| CU074_RS21140 | 4232688..4233026 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4233149..4233294 | - | 146 | - | - | Antitoxin |
| - | 4233185..4233287 | + | 103 | - | - | Toxin |
| CU074_RS29325 | 4233663..4233806 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| CU074_RS21150 | 4233911..4234879 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| CU074_RS21155 | 4235036..4235689 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| CU074_RS21160 | 4235686..4235877 | - | 192 | WP_002911395.1 | YebW family protein | - |
| CU074_RS21165 | 4235975..4236214 | - | 240 | WP_002911393.1 | YebV family protein | - |
| CU074_RS21170 | 4236330..4237763 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T88779 NZ_CP024838:4233185-4233287 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT88779 NZ_CP024838:c4233294-4233149 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
