Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1575310..1575455 | Replicon | chromosome |
| Accession | NZ_CP024834 | ||
| Organism | Klebsiella pneumoniae strain CRKP-2297 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1575346..1575448 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1575310..1575455 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CU075_RS07900 | 1570440..1572500 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| CU075_RS07905 | 1572504..1573163 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| CU075_RS07910 | 1573242..1573472 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CU075_RS07915 | 1573585..1573959 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| CU075_RS07920 | 1573963..1574832 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| CU075_RS07925 | 1574849..1575187 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1575310..1575455 | - | 146 | - | - | Antitoxin |
| - | 1575346..1575448 | + | 103 | - | - | Toxin |
| CU075_RS29115 | 1575824..1575967 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| CU075_RS07935 | 1576072..1577040 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| CU075_RS07940 | 1577197..1577850 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| CU075_RS07945 | 1577847..1578038 | - | 192 | WP_002911395.1 | YebW family protein | - |
| CU075_RS07950 | 1578136..1578375 | - | 240 | WP_002911393.1 | YebV family protein | - |
| CU075_RS07955 | 1578491..1579924 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T88750 NZ_CP024834:1575346-1575448 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT88750 NZ_CP024834:c1575455-1575310 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
