Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3679647..3679918 Replicon chromosome
Accession NZ_CP024830
Organism Escherichia coli strain CREC-532

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3679685..3679788 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3679647..3679918 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CU076_RS19020 3676804..3678243 + 1440 WP_001352260.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
CU076_RS19025 3678361..3678597 + 237 WP_001295499.1 DUF1480 family protein -
CU076_RS19030 3678702..3678893 + 192 WP_000457842.1 YebW family protein -
CU076_RS19035 3678894..3679550 - 657 WP_000812724.1 protein-serine/threonine phosphatase -
- 3679647..3679918 + 272 - - Antitoxin
- 3679685..3679788 - 104 - - Toxin
CU076_RS19040 3679946..3680287 - 342 WP_000976476.1 YebY family protein -
CU076_RS19045 3680300..3681172 - 873 WP_000879289.1 copper homeostasis membrane protein CopD -
CU076_RS19050 3681176..3681550 - 375 WP_000168747.1 CopC domain-containing protein YobA -
CU076_RS19055 3681689..3681919 + 231 WP_000916763.1 DNA polymerase III subunit theta -
CU076_RS19060 3682021..3682677 + 657 WP_000011658.1 carbon-nitrogen hydrolase family protein -
CU076_RS19065 3682701..3683363 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T88724 NZ_CP024830:c3679788-3679685 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT88724 NZ_CP024830:3679647-3679918 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References