Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2184715..2184986 | Replicon | chromosome |
| Accession | NZ_CP024826 | ||
| Organism | Escherichia coli strain CREC-544 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2184846..2184948 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2184715..2184986 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CU077_RS11060 | 2181270..2181932 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CU077_RS11065 | 2181956..2182612 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| CU077_RS11070 | 2182714..2182944 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CU077_RS11075 | 2183083..2183457 | + | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| CU077_RS11080 | 2183461..2184333 | + | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| CU077_RS11085 | 2184346..2184687 | + | 342 | WP_000976484.1 | YebY family protein | - |
| - | 2184715..2184986 | - | 272 | - | - | Antitoxin |
| - | 2184846..2184948 | + | 103 | - | - | Toxin |
| CU077_RS11090 | 2185083..2185739 | + | 657 | WP_000812752.1 | protein-serine/threonine phosphatase | - |
| CU077_RS11095 | 2185740..2185931 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CU077_RS11100 | 2186036..2186272 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CU077_RS11105 | 2186390..2187829 | - | 1440 | WP_024179479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T88683 NZ_CP024826:2184846-2184948 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT88683 NZ_CP024826:c2184986-2184715 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
