Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 120905..121176 | Replicon | chromosome |
| Accession | NZ_CP024821 | ||
| Organism | Escherichia coli strain CREC-591 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 121035..121138 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 120905..121176 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CU078_RS00705 | 117460..118122 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CU078_RS00710 | 118146..118802 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| CU078_RS00715 | 118904..119134 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CU078_RS00720 | 119273..119647 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CU078_RS00725 | 119651..120523 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| CU078_RS00730 | 120536..120877 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 120905..121176 | - | 272 | - | - | Antitoxin |
| - | 121035..121138 | + | 104 | - | - | Toxin |
| CU078_RS00735 | 121273..121929 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| CU078_RS00740 | 121930..122121 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CU078_RS00745 | 122226..122462 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CU078_RS00750 | 122580..124019 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T88635 NZ_CP024821:121035-121138 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT88635 NZ_CP024821:c121176-120905 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
