Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3789475..3789631 | Replicon | chromosome |
| Accession | NZ_CP024819 | ||
| Organism | Citrobacter freundii strain CRCB-101 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3789493..3789596 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3789475..3789631 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CU079_RS18405 | 3785550..3786938 | + | 1389 | WP_198432250.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CU079_RS18410 | 3787039..3787275 | + | 237 | WP_029139506.1 | DUF1480 family protein | - |
| CU079_RS18415 | 3787378..3787569 | + | 192 | WP_016152779.1 | YebW family protein | - |
| CU079_RS18420 | 3787570..3788211 | - | 642 | WP_100194484.1 | protein-serine/threonine phosphatase | - |
| CU079_RS18425 | 3788307..3789137 | - | 831 | WP_100194485.1 | GIY-YIG nuclease family protein | - |
| - | 3789475..3789631 | + | 157 | - | - | Antitoxin |
| - | 3789493..3789596 | - | 104 | - | - | Toxin |
| CU079_RS18430 | 3789752..3790090 | - | 339 | WP_043016684.1 | YebY family protein | - |
| CU079_RS18435 | 3790111..3790983 | - | 873 | WP_100194486.1 | copper homeostasis membrane protein CopD | - |
| CU079_RS18440 | 3790987..3791361 | - | 375 | WP_047410546.1 | CopC domain-containing protein YobA | - |
| CU079_RS18445 | 3791505..3791735 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| CU079_RS18450 | 3791842..3792498 | + | 657 | WP_043016686.1 | carbon-nitrogen hydrolase family protein | - |
| CU079_RS18455 | 3792522..3793184 | + | 663 | WP_043016687.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3780140..3795265 | 15125 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T88626 NZ_CP024819:c3789596-3789493 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 157 bp
>AT88626 NZ_CP024819:3789475-3789631 [Citrobacter freundii]
CTGGTTTATAAGGCACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCG
TGCGCTAAAAGTTGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CTGGTTTATAAGGCACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCG
TGCGCTAAAAGTTGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
