Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2024013..2024284 | Replicon | chromosome |
| Accession | NZ_CP024801 | ||
| Organism | Escherichia coli strain AMA1167 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2024143..2024246 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2024013..2024284 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CUC42_RS10310 | 2020568..2021230 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CUC42_RS10315 | 2021254..2021910 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CUC42_RS10320 | 2022012..2022242 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CUC42_RS10325 | 2022381..2022755 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CUC42_RS10330 | 2022759..2023631 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| CUC42_RS10335 | 2023644..2023985 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2024013..2024284 | - | 272 | - | - | Antitoxin |
| - | 2024143..2024246 | + | 104 | - | - | Toxin |
| CUC42_RS10340 | 2024381..2025037 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| CUC42_RS10345 | 2025038..2025229 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CUC42_RS10350 | 2025334..2025570 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CUC42_RS10355 | 2025688..2027127 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1981100..2027133 | 46033 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T88533 NZ_CP024801:2024143-2024246 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT88533 NZ_CP024801:c2024284-2024013 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
