Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 3238696..3239231 Replicon chromosome
Accession NZ_CP024780
Organism Pectobacterium brasiliense strain BZA12

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag CTV95_RS14710 Protein ID WP_100017842.1
Coordinates 3238944..3239231 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID Q6DB37
Locus tag CTV95_RS14705 Protein ID WP_010281712.1
Coordinates 3238696..3238947 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CTV95_RS14680 3234328..3234840 - 513 WP_164671261.1 phenolic acid decarboxylase -
CTV95_RS14685 3234940..3235812 + 873 WP_039510299.1 LysR family transcriptional regulator -
CTV95_RS14690 3235856..3236479 - 624 WP_039510292.1 LysE family translocator -
CTV95_RS14695 3236747..3237502 + 756 WP_100017840.1 thiol:disulfide interchange protein DsbG -
CTV95_RS14700 3237536..3238441 - 906 WP_100017841.1 siderophore-interacting protein -
CTV95_RS14705 3238696..3238947 + 252 WP_010281712.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
CTV95_RS14710 3238944..3239231 + 288 WP_100017842.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
CTV95_RS14715 3239349..3240701 - 1353 WP_039279933.1 glutathione-disulfide reductase -
CTV95_RS14720 3240830..3241672 - 843 WP_039550208.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
CTV95_RS14725 3241952..3242335 - 384 WP_100017843.1 TfoX/Sxy family protein -
CTV95_RS14730 3242435..3242992 - 558 Protein_2839 alkyl/aryl-sulfatase -
CTV95_RS14735 3243168..3243896 + 729 WP_100017844.1 DUF1266 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11046.10 Da        Isoelectric Point: 10.3527

>T88508 WP_100017842.1 NZ_CP024780:3238944-3239231 [Pectobacterium brasiliense]
MSYSVKFREDALKEWLKLDKTIQQQFAKKLKKCCENPHIPSAKLRGMKDCYKIKLRASGFRLVYEVIDDVLIIAAVAVGK
RERSGVYHLASERMR

Download         Length: 288 bp

>T88508 NZ_CP024780:3238944-3239231 [Pectobacterium brasiliense]
ATGAGCTATAGCGTTAAATTCAGGGAAGATGCGCTGAAAGAATGGCTCAAGCTCGATAAAACCATCCAGCAGCAATTTGC
CAAAAAACTAAAAAAATGCTGCGAAAATCCCCATATTCCTTCAGCAAAGTTACGGGGGATGAAGGACTGCTACAAAATAA
AGCTCCGAGCGTCAGGCTTTCGTTTGGTTTATGAGGTTATTGACGACGTATTGATTATCGCCGCAGTGGCGGTAGGCAAA
CGTGAGCGCAGCGGTGTTTATCATCTGGCGAGTGAGCGAATGAGATAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9117.47 Da        Isoelectric Point: 4.0637

>AT88508 WP_010281712.1 NZ_CP024780:3238696-3238947 [Pectobacterium brasiliense]
MPNIILSDTSASVSELKKNPMATVNAGDGLPVAILNRNQPAFYCIPADLYEKMLDALDDQELVKLIGERKNQPLVDVDLD
SFL

Download         Length: 252 bp

>AT88508 NZ_CP024780:3238696-3238947 [Pectobacterium brasiliense]
ATGCCGAATATTATATTGAGTGATACCAGTGCTAGCGTCAGTGAACTGAAAAAGAACCCAATGGCGACGGTCAATGCTGG
CGATGGCCTGCCTGTTGCTATCTTGAACCGTAACCAGCCTGCGTTTTATTGCATTCCTGCGGATCTCTACGAAAAAATGC
TGGATGCGCTGGACGATCAAGAACTGGTCAAGCTAATCGGTGAACGCAAAAACCAGCCGCTGGTTGACGTGGATTTGGAT
AGTTTCCTATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A0M2EZP0

References