88507

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) sdenTA/AbiEii(toxin)
Location 3165821..3167261 Replicon chromosome
Accession NZ_CP024780
Organism Pectobacterium brasiliense strain BZA12

Toxin (Protein)


Gene name sdenT Uniprot ID -
Locus tag CTV95_RS14380 Protein ID WP_100017805.1
Coordinates 3165821..3166708 (-) Length 296 a.a.

Antitoxin (Protein)


Gene name sdenA Uniprot ID -
Locus tag CTV95_RS14385 Protein ID WP_039521884.1
Coordinates 3166737..3167261 (-) Length 175 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CTV95_RS14350 3160933..3161481 + 549 WP_100017802.1 ImmA/IrrE family metallo-endopeptidase -
CTV95_RS14355 3161471..3162553 + 1083 WP_100017803.1 hypothetical protein -
CTV95_RS14360 3162546..3163151 - 606 WP_100017804.1 sce7726 family protein -
CTV95_RS22575 3163555..3163944 + 390 WP_198406554.1 hypothetical protein -
CTV95_RS14370 3164231..3164530 - 300 WP_198406555.1 acyl-CoA dehydrogenase -
CTV95_RS14380 3165821..3166708 - 888 WP_100017805.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein Toxin
CTV95_RS14385 3166737..3167261 - 525 WP_039521884.1 hypothetical protein Antitoxin
CTV95_RS14390 3167593..3170082 - 2490 WP_100017806.1 restriction endonuclease-like protein -
CTV95_RS14395 3170101..3171951 - 1851 WP_100017807.1 DUF3578 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 3158663..3173493 14830


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Nucleotidyl transferase AbiEii toxin, Type IV TA system

(39-265)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 296 a.a.        Molecular weight: 34159.13 Da        Isoelectric Point: 5.6799

>T88507 WP_100017805.1 NZ_CP024780:c3166708-3165821 [Pectobacterium brasiliense]
MLKQQIRQIVQSNPDYAAVTPVIEKEILHHDIIDVLIKQGVMQRLTFIGGTSLRMCYNSSRLSEDLDFNGGHDFKPSAFE
GLESEIQTYIQNKYETEVWVNKPSGEQQGDTVSWKISIVKEANRPDLPRQKMHIDVCAIPSFDIEKRPLINHYDIVVPTE
GILVPVQSLQETLADKLIALAYRARRIKPRDIWDIVWIKQRGIDLSKTLVEKKLTARHKQTDDFRQALSIQLAKLMLEDE
VRDDFNMEMSRFIPKQIKERTLDNPEYWDYVQGEVHAITSELLNDVTPKNPFDMG

Download         Length: 888 bp

>T88507 NZ_CP024780:c3166708-3165821 [Pectobacterium brasiliense]
ATGCTGAAGCAACAAATTCGCCAAATCGTCCAGTCAAACCCTGACTATGCCGCAGTGACACCCGTCATAGAAAAAGAGAT
CTTGCATCATGACATTATAGATGTGCTGATCAAACAGGGTGTCATGCAACGGTTAACGTTTATTGGCGGCACCTCATTAC
GAATGTGTTACAACAGTAGCAGGCTATCAGAAGATCTTGATTTCAATGGTGGTCATGATTTCAAGCCCTCAGCATTTGAG
GGGCTGGAATCCGAGATCCAAACCTATATTCAGAACAAGTATGAAACCGAAGTTTGGGTAAACAAACCTTCTGGCGAGCA
GCAAGGGGATACCGTTTCTTGGAAAATTAGTATCGTAAAAGAAGCGAATCGTCCTGATTTGCCACGGCAAAAAATGCATA
TTGATGTCTGTGCTATTCCATCATTTGATATTGAAAAGCGCCCGCTAATCAATCATTACGACATTGTTGTACCGACTGAA
GGGATCTTGGTTCCGGTACAATCGTTACAAGAAACACTAGCCGATAAGCTGATCGCGTTAGCGTATCGGGCAAGACGTAT
AAAGCCTCGTGATATCTGGGATATTGTTTGGATTAAGCAGCGCGGCATTGATCTATCCAAAACACTGGTTGAAAAGAAAC
TCACCGCCAGACACAAGCAAACAGATGACTTTCGACAGGCGCTATCTATTCAGTTAGCTAAGTTAATGTTGGAAGATGAA
GTCCGTGACGACTTTAATATGGAAATGAGCCGCTTTATCCCTAAGCAAATTAAAGAGAGAACCCTCGATAATCCCGAATA
TTGGGATTATGTTCAGGGAGAGGTACATGCCATCACGTCTGAGTTATTGAATGACGTAACACCAAAAAATCCATTTGATA
TGGGTTAA

Antitoxin


Download         Length: 175 a.a.        Molecular weight: 19432.52 Da        Isoelectric Point: 9.0504

>AT88507 WP_039521884.1 NZ_CP024780:c3167261-3166737 [Pectobacterium brasiliense]
MTKSDELLNVFSKAVNAGGGIHSATELAFMQGVPCDSAFRKFLADCVKKGLLRRVVKGFYESVITPPEPETAIYKIIKKL
RSGVLNYISLESQLSHTGDISQVVMGRVTVVTKGRSGCFDTPYGVIEFTHTKKPVEQVAPNLYYDPDIKMYRAYKEQAIA
DLKHCQRNLHMLES

Download         Length: 525 bp

>AT88507 NZ_CP024780:c3167261-3166737 [Pectobacterium brasiliense]
ATGACTAAATCTGATGAGCTACTAAACGTATTTTCCAAAGCGGTGAACGCTGGCGGTGGCATTCACAGTGCAACAGAGCT
GGCTTTTATGCAGGGTGTGCCATGTGACTCAGCCTTTAGAAAGTTCCTAGCCGATTGCGTAAAGAAGGGATTGCTAAGAC
GAGTGGTGAAAGGCTTCTATGAAAGTGTTATTACACCACCTGAGCCTGAGACTGCCATTTATAAAATCATCAAAAAGTTG
CGCAGTGGCGTATTGAACTACATCAGTTTAGAAAGCCAGCTCAGTCATACCGGTGATATTTCACAAGTTGTGATGGGTAG
AGTCACGGTAGTGACTAAAGGTCGAAGTGGTTGTTTTGATACGCCTTATGGCGTGATCGAGTTTACCCATACTAAAAAGC
CAGTCGAGCAAGTTGCACCTAATTTGTACTATGACCCTGACATTAAAATGTATCGCGCATACAAGGAACAAGCGATTGCA
GATCTAAAGCACTGCCAGCGCAATCTACATATGTTGGAGAGCTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References