Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) ccdAB/CcdA(antitoxin)
Location 3847245..3847765 Replicon chromosome
Accession NZ_CP024720
Organism Escherichia coli isolate NQ3

Toxin (Protein)


Gene name ccdB Uniprot ID A0A061KX66
Locus tag CUB98_RS20290 Protein ID WP_001160964.1
Coordinates 3847245..3847529 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name ccdA Uniprot ID V0VEX8
Locus tag CUB98_RS20295 Protein ID WP_000125566.1
Coordinates 3847532..3847765 (-) Length 78 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CUB98_RS20265 3842890..3844176 + 1287 WP_000800457.1 peptidylprolyl isomerase SurA -
CUB98_RS20270 3844176..3845165 + 990 WP_000241227.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA -
CUB98_RS20275 3845162..3845983 + 822 WP_001065365.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
CUB98_RS20280 3845986..3846363 + 378 WP_000610901.1 Co2+/Mg2+ efflux protein ApaG -
CUB98_RS20285 3846370..3847218 + 849 WP_000257181.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH -
CUB98_RS20290 3847245..3847529 - 285 WP_001160964.1 CcdB family protein Toxin
CUB98_RS20295 3847532..3847765 - 234 WP_000125566.1 type II toxin-antitoxin system CcdA family antitoxin Antitoxin
CUB98_RS20300 3847851..3848330 - 480 WP_000624375.1 type 3 dihydrofolate reductase -
CUB98_RS20305 3848522..3850384 - 1863 WP_000377124.1 glutathione-regulated potassium-efflux system protein KefC -
CUB98_RS20310 3850377..3850907 - 531 WP_000600725.1 glutathione-regulated potassium-efflux system oxidoreductase KefF -
CUB98_RS20315 3851015..3852346 - 1332 WP_001183209.1 MFS transporter -
CUB98_RS20320 3852405..3852692 - 288 WP_000203744.1 ferredoxin-like protein FixX -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin CcdB

(2-93)

Antitoxin

Post-segregation antitoxin CcdA

(8-77)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 10692.54 Da        Isoelectric Point: 10.3030

>T88479 WP_001160964.1 NZ_CP024720:c3847529-3847245 [Escherichia coli]
MQFTVYRSRGRNAAFPFVIDVTSDIIGEINRRIVIPLTPIERFSRIRPPERLNPILLLIDGKEYVLMTHETATVPVNALG
TKFCDASAHRTLIK

Download         Length: 285 bp

>T88479 NZ_CP024720:c3847529-3847245 [Escherichia coli]
ATGCAATTTACGGTATACCGCAGTCGCGGCAGGAACGCCGCGTTTCCCTTTGTTATTGATGTTACCAGCGACATTATTGG
TGAGATTAATCGCCGTATCGTTATTCCATTAACACCTATTGAACGATTTAGCCGTATTCGCCCACCAGAACGGCTTAACC
CAATCCTTTTACTGATAGACGGCAAAGAATATGTGCTCATGACGCATGAGACTGCAACTGTTCCAGTTAACGCGCTGGGA
ACGAAATTTTGCGATGCCAGCGCGCACCGAACGTTGATTAAATGA

Antitoxin


Download         Length: 78 a.a.        Molecular weight: 8530.53 Da        Isoelectric Point: 5.8062

>AT88479 WP_000125566.1 NZ_CP024720:c3847765-3847532 [Escherichia coli]
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAATRWREENAEAIAALNQLADETGCFSDEYRSF

Download         Length: 234 bp

>AT88479 NZ_CP024720:c3847765-3847532 [Escherichia coli]
ATGACTGCAAAACGTACCACACAAAGTGTGACCGTCACCGTCGACCGTGAGTTAGTCAATCGCGCTCGTGATGCAGGCTT
AAATATGAGCGCCACCCTTACGGTTGCGCTCAATGCTGAACTTAAAAAACATGCAGCAACACGTTGGCGTGAAGAGAACG
CAGAAGCTATCGCTGCGTTAAATCAATTGGCTGATGAAACCGGATGTTTCTCTGATGAGTACCGGAGCTTCTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A061KX66

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9LTM9

References