Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4713857..4714125 | Replicon | chromosome |
| Accession | NZ_CP024717 | ||
| Organism | Escherichia coli strain LS4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4713985..4714087 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4713857..4714125 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CUB99_RS24430 | 4710410..4711072 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CUB99_RS24435 | 4711096..4711752 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| CUB99_RS24440 | 4711854..4712084 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CUB99_RS24445 | 4712223..4712597 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CUB99_RS24450 | 4712601..4713473 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| CUB99_RS24455 | 4713486..4713827 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 4713857..4714125 | - | 269 | - | - | Antitoxin |
| - | 4713985..4714087 | + | 103 | - | - | Toxin |
| CUB99_RS24460 | 4714222..4714878 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| CUB99_RS24465 | 4714879..4715070 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CUB99_RS24470 | 4715175..4715411 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CUB99_RS24475 | 4715528..4716967 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T88445 NZ_CP024717:4713985-4714087 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT88445 NZ_CP024717:c4714125-4713857 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
