88426

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 5859349..5861078 Replicon chromosome
Accession NZ_CP024712
Organism Pseudomonas syringae pv. actinidiae strain MAFF212063

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag CT122_RS27605 Protein ID WP_099978289.1
Coordinates 5859349..5859993 (+) Length 215 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag CT122_RS27610 Protein ID WP_099978290.1
Coordinates 5859990..5861078 (+) Length 363 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CT122_RS27580 5854422..5855231 + 810 WP_020308812.1 zinc-dependent peptidase -
CT122_RS27585 5855342..5855869 + 528 WP_003379107.1 inorganic diphosphatase -
CT122_RS27590 5856215..5856946 + 732 WP_003379109.1 helix-turn-helix transcriptional regulator -
CT122_RS27595 5857246..5858367 - 1122 WP_003379112.1 DUF91 domain-containing protein -
CT122_RS27600 5858785..5859352 + 568 Protein_5094 DUF4433 domain-containing protein -
CT122_RS27605 5859349..5859993 + 645 WP_099978289.1 DUF4433 domain-containing protein Toxin
CT122_RS27610 5859990..5861078 + 1089 WP_099978290.1 macro domain-containing protein Antitoxin
CT122_RS33320 5861179..5861432 - 254 Protein_5097 glycosyl transferase family 2 -
CT122_RS27615 5861513..5862217 - 705 WP_058975146.1 ABC transporter ATP-binding protein -
CT122_RS27620 5862214..5862990 - 777 WP_019332022.1 ABC transporter permease -
CT122_RS27625 5863323..5864165 + 843 WP_003379119.1 glutathione-dependent disulfide-bond oxidoreductase -
CT122_RS27630 5864291..5865319 + 1029 WP_099978291.1 DUF1016 family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(14-213)

Antitoxin

Macro domain

(18-130)


Sequences

Toxin        


Download         Length: 215 a.a.        Molecular weight: 24811.36 Da        Isoelectric Point: 6.2173

>T88426 WP_099978289.1 NZ_CP024712:5859349-5859993 [Pseudomonas syringae pv. actinidiae]
MIYSSLNPEKALIWRIVHRDNLPWILDNGLHCASSYMQALQYVDIGNADLIDKRRNRSVPIAPAGVLSDYVPFYFTPFSV
MMKNIHSGWSVQQRSNDEIVILVSSLPHIEQLGLAFVFTNAHAYPDWTDYYSDLVNLDQIDWPIIQKRDFKRDPDDPRKM
ERYQAEALIHHHLPITGLLGIMCYDDAMKERIEQDVAARGLTLPVHARPGWYFQ

Download         Length: 645 bp

>T88426 NZ_CP024712:5859349-5859993 [Pseudomonas syringae pv. actinidiae]
ATGATCTACAGCAGTCTGAATCCAGAAAAAGCTCTGATTTGGCGAATCGTCCACCGCGATAATCTGCCTTGGATTCTGGA
CAATGGCCTGCATTGCGCAAGCTCCTACATGCAAGCACTGCAGTACGTGGACATCGGCAACGCTGACCTGATCGACAAAC
GCCGCAATCGCAGTGTTCCAATTGCTCCAGCGGGCGTACTGTCCGACTACGTGCCCTTCTACTTCACACCTTTCTCTGTG
ATGATGAAAAATATCCATTCCGGCTGGAGCGTTCAGCAGCGTAGCAATGACGAGATAGTAATTCTGGTCTCAAGCCTGCC
TCATATTGAGCAGCTTGGCCTGGCGTTCGTCTTTACCAACGCACACGCCTACCCTGACTGGACCGATTACTACAGCGATC
TGGTGAATCTCGACCAGATCGACTGGCCTATAATCCAGAAACGAGACTTCAAGCGTGACCCTGATGATCCGCGTAAGATG
GAGCGTTATCAGGCCGAAGCGCTCATTCACCATCACCTACCGATTACAGGACTCCTGGGCATCATGTGCTACGACGATGC
AATGAAAGAACGCATTGAGCAAGACGTTGCCGCCCGAGGTCTGACTTTGCCTGTCCACGCGCGTCCGGGATGGTATTTCC
AATGA

Antitoxin


Download         Length: 363 a.a.        Molecular weight: 40650.65 Da        Isoelectric Point: 6.1829

>AT88426 WP_099978290.1 NZ_CP024712:5859990-5861078 [Pseudomonas syringae pv. actinidiae]
MIRFTQGNLLEADTEALVNTVNTVGVMGKGIALMFKERFTENYRLYSAACKAGEVETGKVHVTAVNELDGPRWIVNFPTK
RHWRSPSQMAWITEGLRDLRRFLIDNHVKSVAVPPLGAGNGGLKWVEVREQIVDVLSDLDVDVLVFEPTDQYLNVAKRSG
VEKLTPARALIAELVRRYWVLGMECSLLEIQKLAWFLERSIEQLPSAKNPLDLKFVAHKYGPYTNRLEHLLDNLDGSYLH
CDKRISDAGIDDVIWFDEGRKAFLQTYLKTEAKEYSQALERTAELIDGFESPFGMELLATVDWLLCKSGVSPTVPTVREA
LKHWDGGAGAAARKSRLFDDKAIDIALKRLTTSSLSPEMAPS

Download         Length: 1089 bp

>AT88426 NZ_CP024712:5859990-5861078 [Pseudomonas syringae pv. actinidiae]
ATGATCAGATTCACCCAGGGCAATCTGCTGGAAGCAGATACCGAAGCTCTCGTCAACACGGTGAACACTGTAGGCGTGAT
GGGAAAAGGCATTGCGCTGATGTTCAAGGAGCGCTTTACCGAAAACTATCGCCTCTATTCTGCGGCGTGCAAGGCGGGTG
AGGTAGAGACCGGAAAGGTTCACGTAACGGCAGTCAACGAGCTGGACGGCCCGCGCTGGATAGTGAATTTCCCTACCAAG
CGTCACTGGCGTTCCCCCTCGCAGATGGCATGGATCACCGAAGGCTTACGGGATCTGCGCCGTTTTTTGATCGATAACCA
CGTGAAGTCCGTAGCGGTTCCACCTCTAGGGGCGGGTAATGGCGGTTTGAAATGGGTAGAGGTCCGTGAGCAGATTGTTG
ATGTCTTGAGTGATCTGGATGTCGATGTACTTGTCTTTGAACCCACTGATCAATATCTGAATGTCGCAAAGCGTAGCGGT
GTCGAGAAACTGACGCCTGCACGCGCACTCATCGCCGAACTCGTTCGGCGTTACTGGGTTTTGGGCATGGAATGCAGCTT
GCTTGAGATTCAGAAGCTCGCTTGGTTTCTGGAGCGCTCGATAGAACAACTGCCAAGCGCCAAGAACCCCTTGGATCTCA
AATTTGTAGCCCACAAATATGGGCCATACACCAATCGCCTTGAGCATCTGCTCGACAATCTCGATGGTAGCTACCTGCAT
TGCGATAAACGCATCAGCGACGCAGGTATTGACGACGTGATCTGGTTTGACGAGGGCCGTAAGGCTTTTCTGCAAACTTA
TCTGAAAACAGAGGCCAAGGAATATTCCCAGGCTCTGGAGCGCACCGCAGAGCTGATTGACGGCTTTGAGTCGCCTTTCG
GCATGGAACTGTTGGCGACGGTTGACTGGTTATTGTGTAAGTCGGGAGTGTCTCCAACGGTTCCGACAGTGCGTGAAGCA
TTGAAGCATTGGGATGGAGGCGCAGGTGCGGCGGCTCGGAAAAGCAGGTTGTTTGATGATAAAGCGATAGACATTGCGCT
AAAGCGGTTGACTACCAGCAGTCTCAGTCCAGAGATGGCCCCTTCCTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References