Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/ParE-YafN |
Location | 1806543..1807068 | Replicon | chromosome |
Accession | NZ_CP024712 | ||
Organism | Pseudomonas syringae pv. actinidiae strain MAFF212063 |
Toxin (Protein)
Gene name | relE | Uniprot ID | A0A0K8M609 |
Locus tag | CT122_RS08365 | Protein ID | WP_017684329.1 |
Coordinates | 1806543..1806833 (-) | Length | 97 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | A0A0K8M645 |
Locus tag | CT122_RS08370 | Protein ID | WP_017684328.1 |
Coordinates | 1806823..1807068 (-) | Length | 82 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
CT122_RS08345 | 1801815..1802285 | - | 471 | WP_003382605.1 | MaoC family dehydratase | - |
CT122_RS08355 | 1802681..1804369 | + | 1689 | WP_003382606.1 | long-chain-fatty-acid--CoA ligase FadD2 | - |
CT122_RS08360 | 1804724..1806415 | + | 1692 | WP_003382607.1 | long-chain-fatty-acid--CoA ligase FadD1 | - |
CT122_RS08365 | 1806543..1806833 | - | 291 | WP_017684329.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
CT122_RS08370 | 1806823..1807068 | - | 246 | WP_017684328.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
CT122_RS08375 | 1807241..1811152 | + | 3912 | WP_099979114.1 | ATP-dependent RNA helicase HrpA | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 a.a. Molecular weight: 11019.86 Da Isoelectric Point: 10.4180
>T88423 WP_017684329.1 NZ_CP024712:c1806833-1806543 [Pseudomonas syringae pv. actinidiae]
MTFKLEFLPSALKEWKKLGHTVSAQLKKKLLERLELPRNAGDALHGMPDHYKIKLRSAGYRLVYRVEDDRVVVTVVAVGK
RERGDIYDSAKDRLSP
MTFKLEFLPSALKEWKKLGHTVSAQLKKKLLERLELPRNAGDALHGMPDHYKIKLRSAGYRLVYRVEDDRVVVTVVAVGK
RERGDIYDSAKDRLSP
Download Length: 291 bp
>T88423 NZ_CP024712:c1806833-1806543 [Pseudomonas syringae pv. actinidiae]
TTGACCTTTAAGCTCGAGTTTCTGCCTTCAGCCCTGAAAGAGTGGAAAAAACTGGGGCATACCGTTAGTGCTCAACTCAA
GAAAAAGCTTTTGGAGCGGCTCGAATTACCTCGAAATGCGGGCGATGCGCTGCATGGCATGCCCGATCACTACAAAATCA
AGTTGCGCAGTGCTGGTTACAGACTGGTTTACCGGGTGGAAGATGATCGGGTAGTAGTGACCGTCGTCGCTGTAGGCAAG
CGCGAACGAGGCGATATCTACGATTCAGCCAAGGACAGGCTGTCTCCCTGA
TTGACCTTTAAGCTCGAGTTTCTGCCTTCAGCCCTGAAAGAGTGGAAAAAACTGGGGCATACCGTTAGTGCTCAACTCAA
GAAAAAGCTTTTGGAGCGGCTCGAATTACCTCGAAATGCGGGCGATGCGCTGCATGGCATGCCCGATCACTACAAAATCA
AGTTGCGCAGTGCTGGTTACAGACTGGTTTACCGGGTGGAAGATGATCGGGTAGTAGTGACCGTCGTCGCTGTAGGCAAG
CGCGAACGAGGCGATATCTACGATTCAGCCAAGGACAGGCTGTCTCCCTGA
Antitoxin
Download Length: 82 a.a. Molecular weight: 8860.38 Da Isoelectric Point: 4.9721
>AT88423 WP_017684328.1 NZ_CP024712:c1807068-1806823 [Pseudomonas syringae pv. actinidiae]
MQNIFADIAVSVSELKKNPSAVLSGAQGLPVAVLNHNKVMGYMVPAEVFEAMMKRLDDLDLADLIKARQHEKPVSVDILD
L
MQNIFADIAVSVSELKKNPSAVLSGAQGLPVAVLNHNKVMGYMVPAEVFEAMMKRLDDLDLADLIKARQHEKPVSVDILD
L
Download Length: 246 bp
>AT88423 NZ_CP024712:c1807068-1806823 [Pseudomonas syringae pv. actinidiae]
ATGCAAAATATCTTTGCGGACATCGCGGTCAGCGTCTCTGAACTGAAGAAAAACCCGTCAGCCGTCCTGAGCGGCGCACA
AGGCTTGCCCGTCGCAGTACTCAATCACAATAAAGTCATGGGCTACATGGTGCCTGCCGAGGTGTTTGAAGCAATGATGA
AGCGCCTTGATGACCTCGATCTGGCCGACCTGATCAAAGCCAGGCAACATGAAAAGCCGGTATCGGTAGATATACTTGAC
CTTTAA
ATGCAAAATATCTTTGCGGACATCGCGGTCAGCGTCTCTGAACTGAAGAAAAACCCGTCAGCCGTCCTGAGCGGCGCACA
AGGCTTGCCCGTCGCAGTACTCAATCACAATAAAGTCATGGGCTACATGGTGCCTGCCGAGGTGTTTGAAGCAATGATGA
AGCGCCTTGATGACCTCGATCTGGCCGACCTGATCAAAGCCAGGCAACATGAAAAGCCGGTATCGGTAGATATACTTGAC
CTTTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0K8M609 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0K8M645 |